Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
endoplasmic reticulum: 29145071 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400013168 | Potato | cytosol | 98.58 | 98.58 |
| Solyc12g089100.1.1 | Tomato | cytosol | 71.23 | 69.27 |
| Bra035335.1-P | Field mustard | cytosol | 68.4 | 68.08 |
| CDY02425 | Canola | cytosol | 68.4 | 68.08 |
| CDY61017 | Canola | cytosol | 68.4 | 68.08 |
| Bra033653.1-P | Field mustard | cytosol | 67.45 | 67.45 |
| CDY22375 | Canola | cytosol | 67.45 | 67.45 |
| CDX71532 | Canola | cytosol | 67.92 | 67.29 |
| KRH15230 | Soybean | cytosol | 66.98 | 66.36 |
| AT1G45170.1 | Thale cress | cytosol, plastid | 66.51 | 66.2 |
| KRH38143 | Soybean | endoplasmic reticulum | 66.51 | 65.89 |
| AT5G42960.1 | Thale cress | cytosol | 65.09 | 64.79 |
| VIT_18s0001g12290.t01 | Wine grape | cytosol | 61.79 | 61.5 |
| GSMUA_Achr1P08310_001 | Banana | cytosol | 57.08 | 57.89 |
| GSMUA_Achr4P33140_001 | Banana | cytosol | 57.55 | 56.48 |
| Zm00001d012820_P001 | Maize | plastid | 52.83 | 50.22 |
| Os03t0855600-02 | Rice | plastid | 52.36 | 49.55 |
| Zm00001d034890_P001 | Maize | cytosol | 51.42 | 49.55 |
| EER93070 | Sorghum | cytosol | 50.0 | 46.9 |
| TraesCS5D01G564700.1 | Wheat | plastid | 53.3 | 46.69 |
| TraesCS4A01G320500.1 | Wheat | plastid | 53.3 | 46.69 |
| TraesCS5B01G558300.1 | Wheat | cytosol | 52.36 | 45.87 |
| HORVU5Hr1G124350.2 | Barley | nucleus | 52.36 | 28.17 |
Protein Annotations
| EnsemblPlants:Solyc04g080190.2.1 | EnsemblPlantsGene:Solyc04g080190.2 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0022843 | GO:GO:0034220 | GO:GO:0034765 | GO:GO:0098655 | InterPro:OEP24 | PANTHER:PTHR35284 |
| PANTHER:PTHR35284:SF1 | SEG:seg | UniParc:UPI0002765664 | UniProt:K4BV98 | MapMan:24.4.4 | : |
Description
No Description!
Coordinates
chr4:-:64448802..64452485
Molecular Weight (calculated)
23566.3 Da
IEP (calculated)
9.611
GRAVY (calculated)
-0.230
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MKASFKARYE PDKAAANATV AFNAGDLKLR ASMTDATVVK GPSLNGLALA VEKPGLFIVD YNVPKKDIRF QFMNSIKVLE KPLNLNYIHF HGDKRTILDG
101: TLVVDSANKV SANHVMGSGS CKLKYTYVHG GITTFEPIYD TAKNAWDFMV SRKVYGDDVF KATYQTTSKN LGLEWSRSSK LNGSFKICAS LCLLEERKIP
201: KLSAETSWDF EM
101: TLVVDSANKV SANHVMGSGS CKLKYTYVHG GITTFEPIYD TAKNAWDFMV SRKVYGDDVF KATYQTTSKN LGLEWSRSSK LNGSFKICAS LCLLEERKIP
201: KLSAETSWDF EM
001: MMKASFKGKF DVDKSGSVAS LTFNAGNAKL RATMTDASFV AGPSFNGLSL AVEKPGFFII DYNVPKKDVR FQFMNTIRIA EKPLNLTYIH MRGDNRTIVD
101: GSFVIDPANK LSANYMVGTK NCKLKYTYVH GGIATFEPCY DVAKNMWDFA ISHKLYGGDN LKATYQTSSK MLGLEWSNNS KSTGSFKVCA SMNLAEELKP
201: PKLTAETTWN LEL
101: GSFVIDPANK LSANYMVGTK NCKLKYTYVH GGIATFEPCY DVAKNMWDFA ISHKLYGGDN LKATYQTSSK MLGLEWSNNS KSTGSFKVCA SMNLAEELKP
201: PKLTAETTWN LEL
Arabidopsis Description
OEP24AOuter envelope pore protein 24A, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q1H5C9]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.