Factsheet for PGSC0003DMT400028514

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086207	Potato	nucleus	80.36	72.29
PGSC0003DMT400059198	Potato	nucleus	77.23	48.32
PGSC0003DMT400028500	Potato	nucleus	70.54	39.4
PGSC0003DMT400059166	Potato	nucleus	51.34	37.83
CDX67669	Canola	cytosol, nucleus, plastid	40.18	35.02
Solyc07g008460.2.1	Tomato	nucleus	70.09	34.73
PGSC0003DMT400028986	Potato	endoplasmic reticulum, extracellular	21.88	26.06
VIT_18s0072g00220.t01	Wine grape	nucleus	41.52	25.14
VIT_18s0072g00210.t01	Wine grape	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	41.52	24.8
Bra015723.1-P	Field mustard	nucleus	48.21	23.43
CDX87571	Canola	nucleus	48.21	23.43
CDX88310	Canola	nucleus	47.32	22.99
KRH35109	Soybean	nucleus	49.11	22.92
KRG91687	Soybean	nucleus	50.0	22.58
AT1G76710.3	Thale cress	nucleus	50.89	21.97
VIT_18s0072g00200.t01	Wine grape	nucleus	50.45	21.94
PGSC0003DMT400010951	Potato	cytosol	22.32	21.74
EES10812	Sorghum	nucleus	48.66	20.92
TraesCS2A01G302100.1	Wheat	nucleus	46.88	20.92
Zm00001d003679_P006	Maize	nucleus	47.77	20.86
TraesCS2D01G300800.1	Wheat	nucleus	46.43	20.72
Os04t0429100-01	Rice	nucleus	47.77	20.66
GSMUA_Achr10P...	Banana	nucleus	50.45	20.58
HORVU2Hr1G074910.11	Barley	cytosol, nucleus	45.98	20.44
TraesCS2B01G317900.1	Wheat	nucleus	46.88	19.85
PGSC0003DMT400046777	Potato	nucleus	21.43	7.47
PGSC0003DMT400023342	Potato	nucleus	16.96	4.58
PGSC0003DMT400084490	Potato	nucleus	16.52	4.01
PGSC0003DMT400010235	Potato	nucleus	12.05	3.3
PGSC0003DMT400023546	Potato	nucleus	1.34	0.43

Protein Annotations

KEGG:00310+2.1.1.43	Gene3D:2.170.270.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008150
GO:GO:0008152	GO:GO:0008168	GO:GO:0016740	GO:GO:0032259	InterPro:IPR001214	InterPro:IPR003616
UniProt:M1AR90	PFAM:PF00856	EnsemblPlantsGene:PGSC0003DMG400010980	PGSC:PGSC0003DMG400010980	EnsemblPlants:PGSC0003DMT400028514	PFscan:PS50280
PFscan:PS50868	PANTHER:PTHR22884	PANTHER:PTHR22884:SF455	InterPro:Post-SET_dom	InterPro:SET_dom	SMART:SM00317
SUPFAM:SSF82199	UniParc:UPI000296ABF1	:	:	:	:

Description

SET domain-containing protein SET102 [Source:PGSC_GENE;Acc:PGSC0003DMG400010980]

Coordinates

chr7:+:5372094..5377651

Molecular Weight (calculated)

25190.1 Da

IEP (calculated)

4.475

GRAVY (calculated)

-0.582

Length

224 amino acids

Sequence
(BLAST)

001: MAGQFIIECC GEVISFEEVK KRSQAYESHD LKDVYIISVD GNDFIDSTRK GSFARFINHS CSPNCETSKW IVSGETRVGI FAKQDISVGM ELTYEYNFEW
101: YYWGANVRCL CGAANCSLFL GAKCRRFREY NHVWEDGDDR YIVVDLPVYD STDDESTPVI SGTSGGNEHT KILNDGEGST FKLEPTNSAT KKSQRKPKLK
201: ALLQADVTNT SDDKDEDMEE GEAT

Best Arabidopsis Sequence Match ( AT1G76710.2 )
(BLAST)

001: MQFSCDPDQE GDELPQYEHI YQNDFSYRKH KKQKEEDISI CECKFDFGDP DSACGERCLN VITNTECTPG YCPCGVYCKN QKFQKCEYAK TKLIKCEGRG
101: WGLVALEEIK AGQFIMEYCG EVISWKEAKK RAQTYETHGV KDAYIISLNA SEAIDATKKG SLARFINHSC RPNCETRKWN VLGEVRVGIF AKESISPRTE
201: LAYDYNFEWY GGAKVRCLCG AVACSGFLGA KSRGFQEDTY VWEDGDDRYS VDKIPVYDSA EDELTSEPSK NGESNTNEEK EKDISTENHL ESTALNIQQQ
301: SDSTPTPMEE DVVTETVKTE TSEDMKLLSQ NSQEDSSPKT AIVSRVHGNI SKIKSESLPK KRGRPFSGGK TKNVAQKHVD IANVVQLLAT KEAQDEVLKY
401: EEVKKEAAVR LSSLYDEIRP AIEEHERDSQ DSVATSVAEK WIQASCNKLK AEFDLYSSVI KNIASTPIKP QDTKTKVAEA GNEDHIKLLE AK

Arabidopsis Description

ASHH1SET domain group 26 [Source:TAIR;Acc:AT1G76710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.