Factsheet for Zm00001d039355_P010

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31547	Sorghum	cytosol, nucleus, plastid	56.27	82.78
Zm00001d008941_P002	Maize	plastid	56.55	81.93
HORVU3Hr1G027580.1	Barley	plastid	47.86	68.51
TraesCS3A01G143300.2	Wheat	plastid	47.72	68.44
TraesCS3B01G161800.3	Wheat	plastid	47.72	68.44
Os01t0218800-01	Rice	nucleus	47.51	68.42
TraesCS3D01G144300.2	Wheat	plastid	47.51	68.21
Zm00001d011490_P003	Maize	nucleus	26.98	37.09
Zm00001d044020_P001	Maize	cytosol	5.4	30.08
Zm00001d019907_P003	Maize	nucleus	12.4	16.84
Zm00001d051057_P002	Maize	nucleus	5.19	15.68
Zm00001d020038_P001	Maize	nucleus	3.08	12.36
Zm00001d005563_P006	Maize	nucleus	2.87	12.09
Zm00001d032143_P001	Maize	mitochondrion, nucleus, plastid	4.13	11.82
Zm00001d003679_P006	Maize	nucleus	3.22	8.97
Zm00001d036296_P004	Maize	nucleus, plastid	5.19	7.52
Zm00001d023333_P025	Maize	nucleus	5.96	7.48
Zm00001d047636_P002	Maize	nucleus	4.41	7.09
Zm00001d028890_P002	Maize	nucleus	4.41	5.67
Zm00001d006323_P069	Maize	nucleus	7.78	5.67
Zm00001d016804_P002	Maize	nucleus	5.68	4.51

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:103649567	MapMan:12.3.3.5	Gene3D:2.170.270.10	Gene3D:2.30.30.140	Gene3D:3.30.40.10
Gene3D:3.40.50.1110	UniProt:A0A1D6MFV1	InterPro:EPHD	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0009987	GO:GO:0016043
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	GO:GO:0046872
InterPro:Hist-Lys_N-MeTrfase_ATX	InterPro:IPR000313	InterPro:IPR013083	InterPro:IPR019787	InterPro:IPR025780	InterPro:IPR034732
InterPro:IPR036514	ProteinID:ONM28437.1	PFAM:PF00855	PFAM:PF13831	PFAM:PF13832	ScanProsite:PS01359
PFscan:PS50016	PFscan:PS50812	PFscan:PS51566	PFscan:PS51805	PANTHER:PTHR13793	PANTHER:PTHR13793:SF129
InterPro:PWWP_dom	InterPro:SGNH_hydro_sf	InterPro:SGNH_plant_lipase_like	SMART:SM00249	SUPFAM:SSF57903	SUPFAM:SSF63748
SUPFAM:SSF82199	UniParc:UPI00084370F3	InterPro:Zinc_finger_PHD-type_CS	EnsemblPlantsGene:Zm00001d039355	EnsemblPlants:Zm00001d039355_P010	EnsemblPlants:Zm00001d039355_T010
InterPro:Znf_FYVE_PHD	InterPro:Znf_PHD	InterPro:Znf_PHD-finger	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

arabidopsis trithorax homolog4Histone-lysine N-methyltransferase ATX4

Coordinates

chr3:+:2451357..2465548

Molecular Weight (calculated)

157838.0 Da

IEP (calculated)

7.749

GRAVY (calculated)

-0.260

Length

1427 amino acids

Sequence
(BLAST)

0001: MPATRIPLKR CTAVVPGVED PGPAASMPPA KRRRERVVPS RFRGSMPPPA PVGEEVEVED RDGDVYNVEV RMAEPKGDTF GPVETAVWTP VLPAPMDADL
0101: YRACRNINKS GSCGGAASGS VLTSVSNAAS DGGAGGNGTT VRLSNAGSGG GGGGNGGLEG RPVVVECKPK REVSGRKEDF YWPQDFVLGD VVWARSGKKS
0201: PTWPALVIDP LLHAPEVVLN SCVPGALCVM FFGYSANGHG RDYGWVKQGM IFPFVDYLDR FQGQPLYKLR PSKFRAAIEE AFLAERGFFD LETDGVCSPR
0301: KSVNKQSDPI GFQEEAASNN EQECQSESQV VGKSALCCDS CGNRLPSKVS KKRKQAGEQM LCMHCEKLLQ SKQYCGICKK IWHHTDGGNW VCCDECQIWV
0401: HVECDLTCNN VEDLENADYF CPDCKSKSKT VPATENLNTS TSECASTSKG KLTAMIAVCC NGEDALYVPE KHMILCQCKS CKERMMSLNE WEKHTGSRKK
0501: NWKMSIRQKS TGELLINLLD DIPCGTSKYS NPGIKKEELL QLQANPYSPV CAKWTTERCA VCRWVEDWDY NKIIICNRCQ IAVHQECYGA CAVQDLTTWL
0601: CRACESPQQK RECCLCPVKG GALKPTDIDG LWVHVTCAWF QPKVSFPVDE TMEPAMGIMS IPVEYFKKLI FAFSPINCRL ASYASKCMVP AHNATNALPI
0701: TTQYVRQELD IAWRLNTAHF ALQCSERSGR HITKMVSYCD FHSTPDPDNV LIVKTPEGVF STKFFLQNGE KQTAARLVRK ENHQEKVLPP IISDCLVAKC
0801: LTYEMSKYKK QPGEAIAHRI MGPRHHSQDF IDGLNACMDR KDDQSFSTFK ERLRYLQKTE NLRVSCGRSG IHGWGLFAAR NIQEGQMVIE YRGEQVRRCV
0901: ADLREAQYHR EKKDCYESLS RQGRAAVDAG PKQGHRRCTM TRLLLACLAL LLARAAVARE YAAVFSFGDS LSDTGNLCVD GIPDYLATAH APYGMTYFGY
1001: PTGRVSDGRV VIDFIAQELG LPLLPPSKAK NATFRRGANF AITGATALDM AFFEEHGLAR AVWSSGSLHT QIGWFRDMKP NICSSPQECR ELFRRSLFVV
1101: GEFGGNDYGS TIFSFRPLEE VHALVPHVVD VIARGVEELI AEGAADLVVP GLLPTGCFPM FLSTFVGKPA AAYGPRSGCN RELNTLSWVH NAALQRKVEE
1201: LRARHPDVRI VYADYYTPAI RFVLHAEDFG DSFADTGNDI VVFAANSLAN PAARLPYGMT FFGRPTGRNS NGRLIIDFIA QKLGLPLPPP FLQPQQQHDG
1301: RQGSNFAVAG AFARDASFYR DIPVVGAFAL NTSSSVQLRW FQSLCGRHHP YQADECRGQF RDALFFMGEF GVNDYSLSLF GKNLSQIRSF VPDVVKTIST
1401: ATEVMLAALF SRCMCMHGHG LLLLADS

Best Arabidopsis Sequence Match ( AT3G61740.1 )
(BLAST)

0001: MILKRTLTTF ENQNLKRCKI DSEIEYGRKK GEIIVYKKRQ RATVDQPCSK EPELLTSSSS SLTSKEESQQ VCSDQSKSSR GRVRAVPSRF KDSIVGTWKS
0101: SRRKGESTES SHDDDDVSLG KKVKGFSGSS KLHRSKDSKV FPRKDNGDSS EVDCDYWDVQ ISYDDANFGM PKKSDASRKG VYKPEEFTVG DLVWAKCGKR
0201: FPAWPAVVID PISQAPDGVL KHCVPGAICV MFFGYSKDGT QRDYAWVRQG MVYPFTEFMD KFQDQTNLFN YKASEFNKAL EEAVLAENGN FGDAEIISPD
0301: SSATESDQDY GPASRFQGSY HEDIRTCDGC GSVMPLKSLK RTKDSQPEEL LCKHCSKLRK SNQYCGICKR IWHPSDDGDW VCCDGCDVWV HAECDNITNE
0401: RFKELEHNNY YCPDCKVQHE LTPTILEEQN SVFKSTEKTT ETGLPDAITV VCNGMEGTYI RKFHAIECKC GSCGSRKQSP SEWERHTGCR AKKWKYSVRV
0501: KDTMLPLEKW IAEFSTYTLE TQMLDKQKML SLLEEKYEPV RAKWTTERCA VCRWVEDWEE NKMIICNRCQ VAVHQECYGV SKSQDLTSWV CRACETPDIE
0601: RDCCLCPVKG GALKPSDVEG LWVHVTCAWF RPEVGFLNHE NMEPAVGLFK IPANSFLKVC TICKQTHGSC VHCCKCATHF HAMCASRAGY NMELHCLEKN
0701: GVQRTRKSVY CSFHRKPDPD SVVVVHTPSG VFGSRNLLQN QYGRAKGSRL VLTKKMKLPG FQTQTQAEQS RVFDSLSAAR CRIYSRSNTK IDLEAISHRL
0801: KGPSHHSLSA IENLNSFKAS FSFRAPFMSV FCFLGATFSE YLRKILISIY LVTHQEADFT SFRERLKHLQ RTENFRVCFG KSGIHGWGLF ARKSIQEGEM
0901: IIEYRGVKVR RSVADLREAN YRSQGKDCYL FKISEEIVID ATDSGNIARL INHSCMPNCY ARIVSMGDGE DNRIVLIAKT NVAAGEELTY DYLFEVDESE
1001: EIKVPCLCKA PNCRKFMN

Arabidopsis Description

ATX3Histone-lysine N-methyltransferase ATX3 [Source:UniProtKB/Swiss-Prot;Acc:Q9M364]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.