Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G441200.1 | Wheat | nucleus | 35.75 | 41.58 |
| Os04t0614100-00 | Rice | nucleus | 33.48 | 41.57 |
| KXG20558 | Sorghum | nucleus | 42.08 | 38.91 |
| GSMUA_Achr3P23580_001 | Banana | nucleus | 42.08 | 38.59 |
| Os02t0170300-01 | Rice | nucleus | 44.8 | 38.08 |
| VIT_10s0042g00820.t01 | Wine grape | nucleus | 38.91 | 36.44 |
| TraesCS3D01G090300.1 | Wheat | nucleus | 35.75 | 36.07 |
| GSMUA_Achr2P02660_001 | Banana | nucleus | 38.91 | 35.83 |
| TraesCS3B01G105700.2 | Wheat | nucleus | 36.2 | 35.24 |
| TraesCS3A01G090300.1 | Wheat | nucleus | 35.75 | 35.11 |
| VIT_01s0011g01560.t01 | Wine grape | nucleus | 35.29 | 34.82 |
| TraesCS3A01G090900.1 | Wheat | nucleus | 35.75 | 34.8 |
| TraesCS7A01G475000.1 | Wheat | nucleus | 35.29 | 34.67 |
| TraesCS3D01G102700.1 | Wheat | nucleus | 35.29 | 34.06 |
| CDY45758 | Canola | nucleus | 36.65 | 33.47 |
| Solyc11g005120.1.1 | Tomato | nucleus | 35.75 | 33.19 |
| CDY40800 | Canola | nucleus | 36.2 | 33.06 |
| Os01t0883100-01 | Rice | nucleus | 31.22 | 33.01 |
| Bra013028.1-P | Field mustard | nucleus | 35.75 | 32.92 |
| CDY02217 | Canola | nucleus | 35.75 | 32.92 |
| Os01t0726400-01 | Rice | nucleus | 28.96 | 32.65 |
| VIT_02s0025g02350.t01 | Wine grape | nucleus | 30.32 | 32.52 |
| CDY69354 | Canola | nucleus | 35.29 | 32.23 |
| Bra029365.1-P | Field mustard | nucleus | 35.29 | 32.23 |
| Os05t0423400-01 | Rice | nucleus | 31.22 | 32.09 |
| TraesCS7B01G377700.1 | Wheat | nucleus | 32.58 | 31.86 |
| CDX87180 | Canola | nucleus | 33.94 | 30.61 |
| Os06t0712700-01 | Rice | nucleus | 30.77 | 30.36 |
| KRH40895 | Soybean | nucleus | 33.03 | 29.92 |
| AT5G23260.4 | Thale cress | nucleus | 36.2 | 29.85 |
| HORVU7Hr1G108280.4 | Barley | nucleus, plastid | 35.29 | 29.21 |
| KRG89112 | Soybean | nucleus | 31.67 | 28.57 |
| HORVU7Hr1G108410.1 | Barley | nucleus | 27.6 | 27.98 |
| CDY16841 | Canola | nucleus | 34.39 | 23.9 |
| Bra026507.1-P | Field mustard | nucleus | 33.48 | 23.64 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | EntrezGene:4341786 | EMBL:AP014962 | EMBL:AY174093 | ProteinID:BAD45413.1 |
| ProteinID:BAF20227.1 | ncoils:Coil | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0045944 | GO:GO:0046983 |
| InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 | InterPro:MADS_MEF2-like | EnsemblPlantsGene:Os06g0667200 | EnsemblPlants:Os06t0667200-01 |
| PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | PFscan:PS50066 | PFscan:PS51297 | PANTHER:PTHR11945 |
| PANTHER:PTHR11945:SF259 | UniProt:Q0DA96 | UniProt:Q655V4 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | TMHMM:TMhelix | UniParc:UPI000043A2AC | RefSeq:XP_015644347.1 | SEG:seg |
Description
MADS BOX GENE 30MADS-box transcription factor, Vegetative development (Os06t0667200-01)
Coordinates
chr6:+:27637555..27641578
Molecular Weight (calculated)
25782.5 Da
IEP (calculated)
7.509
GRAVY (calculated)
-0.255
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQGKIEMKR IEDATRRQVT FSKRRAGFLK KANELAVLCD AQVGVVVFSD KGKLFDFCSP PVILMELFHR YEITTRNTRL QETNRDDEQM VMEITRLRNE
101: IDQLEASLRR QTGEDLSSVS TVDELSQLQL QLESSLSKVH ARKDELMSQQ LEDMRRMHQT VHEQNNFLCR MVTKILLLNV ITIMILAAMI SITHARIALD
201: DCMQLGYIVI KQENSWRFWF I
101: IDQLEASLRR QTGEDLSSVS TVDELSQLQL QLESSLSKVH ARKDELMSQQ LEDMRRMHQT VHEQNNFLCR MVTKILLLNV ITIMILAAMI SITHARIALD
201: DCMQLGYIVI KQENSWRFWF I
001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND
Arabidopsis Description
TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.