Factsheet for HORVU7Hr1G108410.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G377700.1	Wheat	nucleus	84.86	81.86
HORVU7Hr1G108280.4	Barley	nucleus, plastid	68.81	56.18
GSMUA_Achr3P23580_001	Banana	nucleus	34.86	31.54
GSMUA_Achr2P02660_001	Banana	nucleus	34.4	31.25
HORVU6Hr1G032220.7	Barley	nucleus	34.86	29.23
KXG20558	Sorghum	nucleus	30.28	27.62
Os06t0667200-01	Rice	nucleus	27.98	27.6
CDY45758	Canola	nucleus	30.28	27.27
Bra013028.1-P	Field mustard	nucleus	29.82	27.08
CDY02217	Canola	nucleus	29.82	27.08
CDX87180	Canola	nucleus	30.28	26.94
VIT_10s0042g00820.t01	Wine grape	nucleus	27.98	25.85
HORVU2Hr1G098930.3	Barley	nucleus	32.11	25.36
VIT_01s0011g01560.t01	Wine grape	nucleus	25.23	24.55
VIT_02s0025g02350.t01	Wine grape	nucleus	21.56	22.82
CDY69354	Canola	nucleus	25.23	22.73
CDY40800	Canola	nucleus	25.23	22.73
Bra029365.1-P	Field mustard	nucleus	25.23	22.73
AT5G23260.4	Thale cress	nucleus	27.52	22.39
Solyc11g005120.1.1	Tomato	nucleus	23.85	21.85
KRH40895	Soybean	nucleus	23.85	21.31
HORVU3Hr1G091000.8	Barley	nucleus, plastid	26.61	21.25
HORVU1Hr1G063620.1	Barley	nucleus	21.56	21.08
CDY16841	Canola	nucleus	30.73	21.07
KRG89112	Soybean	nucleus	23.39	20.82
Bra026507.1-P	Field mustard	nucleus	29.36	20.45
HORVU3Hr1G068900.3	Barley	nucleus, plastid	20.64	15.36
HORVU7Hr1G091210.4	Barley	nucleus, plastid	16.51	15.13

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A287XRF1	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046983	EnsemblPlantsGene:HORVU7Hr1G108410	EnsemblPlants:HORVU7Hr1G108410.1
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	PFAM:PF00319	PFAM:PF01486	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF259	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI000B479943	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr7H:+:625235246..625237448

Molecular Weight (calculated)

24560.7 Da

IEP (calculated)

4.480

GRAVY (calculated)

-0.646

Length

218 amino acids

Sequence
(BLAST)

001: MVDDDDGVSR RATFGELLTE AQELDALCEA DVGVLVFDSA GRQMDYCSPH TSWSELTQRY KSISNDKFQG INPDDDHQLL AEISRLRRER DRLEASVRRQ
101: SGDDLPPAAT AELGDLEQQQ QRALAKVREM KEKLLQQQLD ESYHRVHILE DQNSFLRHMM SEEGRQRAAV EASAVVAELM APPIQPATLF GGFFPEVKEE
201: GASTSLRLWP QQFPGCGN

Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.