Factsheet for TraesCS3D01G102700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G090300.1	Wheat	nucleus	55.46	57.99
TraesCS1D01G441200.1	Wheat	nucleus	41.05	49.47
GSMUA_Achr3P23580_001	Banana	nucleus	41.92	39.83
GSMUA_Achr2P02660_001	Banana	nucleus	39.74	37.92
KXG20558	Sorghum	nucleus	38.43	36.82
TraesCS3D01G401700.1	Wheat	nucleus	32.31	35.41
Os06t0667200-01	Rice	nucleus	34.06	35.29
TraesCS3D01G284200.1	Wheat	nucleus	30.13	35.2
Bra013028.1-P	Field mustard	nucleus	36.24	34.58
CDY02217	Canola	nucleus	36.24	34.58
CDY45758	Canola	nucleus	35.81	33.88
CDX87180	Canola	nucleus	35.37	33.06
TraesCS6D01G147400.1	Wheat	nucleus	36.24	32.94
VIT_10s0042g00820.t01	Wine grape	nucleus	32.75	31.78
TraesCS2D01G418800.2	Wheat	nucleus	37.55	31.73
VIT_01s0011g01560.t01	Wine grape	nucleus	31.0	31.7
CDY40800	Canola	nucleus	33.19	31.41
KRH40895	Soybean	nucleus	32.75	30.74
KRG89112	Soybean	nucleus	32.75	30.61
Bra029365.1-P	Field mustard	nucleus	32.31	30.58
CDY69354	Canola	nucleus	32.31	30.58
Solyc11g005120.1.1	Tomato	nucleus	31.44	30.25
VIT_02s0025g02350.t01	Wine grape	nucleus	26.64	29.61
TraesCS1D01G264500.1	Wheat	nucleus	27.95	29.36
AT5G23260.4	Thale cress	nucleus	33.19	28.36
TraesCS7D01G380300.1	Wheat	nucleus	27.51	27.75
Bra026507.1-P	Field mustard	nucleus	35.81	26.2
CDY16841	Canola	nucleus	36.24	26.1
TraesCS6D01G120900.1	Wheat	nucleus	26.64	25.52

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF259	SMART:SM00432	SUPFAM:SSF55455
InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	EnsemblPlantsGene:TraesCS3D01G102700	EnsemblPlants:TraesCS3D01G102700.1	TIGR:cd00265

Description

No Description!

Coordinates

chr3D:-:55220059..55221552

Molecular Weight (calculated)

26263.5 Da

IEP (calculated)

6.315

GRAVY (calculated)

-0.668

Length

229 amino acids

Sequence
(BLAST)

001: MGRGKVEMKR IDNKLSRQAT FHKRRRGLLK KAQELAVLCD AHLGVLVFSS TGELYDYCSP HTSWSELIQR YKGITNAQLQ GTNRDDDQKL LEDIARLKRE
101: RDHLVASHRM MTGEDMPCST TKEELADLEQ KLECALGKVR EMKDKFLNQQ LEESRHKVSI LEEKNSLMRH VMNHDEQPRA VVEAELMAPM MLPASAFGSF
201: FPEAEEEGLS TSLQLWPQQL PDVQDPSLQ

Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.