Factsheet for GSMUA_Achr9P05780_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G318300.1	Wheat	cytosol	60.75	66.33
TraesCS3D01G284200.1	Wheat	nucleus	60.28	65.82
Os01t0726400-01	Rice	nucleus	58.88	64.29
KXG33296	Sorghum	nucleus	58.88	63.96
Zm00001d011748_P001	Maize	nucleus	56.54	61.42
TraesCS3A01G284400.1	Wheat	nucleus	59.81	60.09
HORVU3Hr1G068900.3	Barley	nucleus, plastid	59.35	43.34
Zm00001d043589_P002	Maize	plastid	55.14	42.91
GSMUA_Achr9P20940_001	Banana	nucleus	20.09	42.16
GSMUA_Achr9P20950_001	Banana	nucleus	32.71	31.11
GSMUA_Achr3P23580_001	Banana	nucleus	34.11	30.29
GSMUA_Achr6P18670_001	Banana	nucleus	28.97	29.38
GSMUA_Achr5P01230_001	Banana	nucleus	28.5	28.91
GSMUA_Achr2P02660_001	Banana	nucleus	32.24	28.75

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr9G05780_001
EnsemblPlants:GSMUA_Achr9P05780_001	EnsemblPlants:GSMUA_Achr9T05780_001	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0TXT7
InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF214	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI00029645E1	SEG:seg	:	:

Description

MADS-box transcription factor 32 [Source:GMGC_GENE;Acc:GSMUA_Achr9G05780_001]

Coordinates

chr9:+:3689920..3691019

Molecular Weight (calculated)

24577.5 Da

IEP (calculated)

8.453

GRAVY (calculated)

-0.574

Length

214 amino acids

Sequence
(BLAST)

001: MGRGRTEIKR IENPIQRQST FYKRRDGLFK KARELSVLCD ADLLLLLFSS SGKLYQYHSP SVASAKELIE RYEVAAQTQI RGDRRLERNA EMEMVEKLCD
101: TLERELRFMK VDEGQQYSLP DLGLLEHNLE TAIGKVRVEM DRKIGAQIHK LETMVRDRQQ ERYGLCDKIA RVQTLRGMEA DGSASSTPGL DLRLGTYSSV
201: DTWLGSSPWF SAHF

Best Arabidopsis Sequence Match ( AT1G26310.1 )
(BLAST)

001: MGRGRVELKR IENKINRQVT FSKRRTGLLK KAQEISVLCD AEVSLIVFSH KGKLFEYSSE SCMEKVLERY ERYSYAERQL IAPDSHVNAQ TNWSMEYSRL
101: KAKIELLERN QRHYLGEELE PMSLKDLQNL EQQLETALKH IRSRKNQLMN ESLNHLQRKE KEIQEENSML TKQIKERENI LRTKQTQCEQ LNRSVDDVPQ
201: PQPFQHPHLY MIAHQTSPFL NMGGLYQEED QTAMRRNNLD LTLEPIYNYL GCYAA

Arabidopsis Description

CALTranscription factor CAULIFLOWER [Source:UniProtKB/Swiss-Prot;Acc:Q39081]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.