Factsheet for PGSC0003DMT400009112

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084630.2.1	Tomato	nucleus	96.89	96.89
GSMUA_Achr9P20940_001	Banana	nucleus	28.0	61.76
PGSC0003DMT400009510	Potato	nucleus	58.22	57.46
KRH28746	Soybean	nucleus	59.56	57.27
GSMUA_Achr9P20950_001	Banana	nucleus	56.44	56.44
KRH76708	Soybean	nucleus	60.89	56.38
EER90370	Sorghum	nucleus	53.33	53.1
Zm00001d036425_P002	Maize	nucleus	52.89	52.42
VIT_04s0023g02820.t01	Wine grape	nucleus	71.11	52.29
TraesCS7B01G286600.2	Wheat	nucleus	52.89	51.97
TraesCS7D01G380300.1	Wheat	nucleus	52.0	51.54
Os06t0712700-01	Rice	nucleus	51.11	51.34
TraesCS7A01G383800.1	Wheat	nucleus	52.89	50.21
TraesCS6B01G159400.1	Wheat	nucleus	44.0	42.86
TraesCS6D01G120900.1	Wheat	nucleus	44.44	41.84
TraesCS6A01G131100.1	Wheat	nucleus	40.89	38.49
HORVU7Hr1G091210.4	Barley	nucleus, plastid	40.0	37.82
PGSC0003DMT400019070	Potato	nucleus	34.67	37.14
PGSC0003DMT400019069	Potato	cytosol	6.22	23.33

Protein Annotations

EntrezGene:102601659	MapMan:15.5.14	Gene3D:3.40.1810.10	ncoils:Coil	GO:GO:0000977	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983
InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	UniProt:M0ZVL6	InterPro:MADS_MEF2-like	PFAM:PF00319
PFAM:PF01486	EnsemblPlantsGene:PGSC0003DMG400003541	PGSC:PGSC0003DMG400003541	EnsemblPlants:PGSC0003DMT400009112	PRINTS:PR00404	PFscan:PS50066
PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF251	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox
InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI0002963DE0	RefSeq:XP_006340689.1	:	:

Description

TDR6 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003541]

Coordinates

chr2:-:39864994..39869063

Molecular Weight (calculated)

26210.3 Da

IEP (calculated)

9.453

GRAVY (calculated)

-0.881

Length

225 amino acids

Sequence
(BLAST)

001: MGRGKIEIKK IENSTNRQVT YSKRRNGIFK KAKELTVLCD AKISLIMLSS TRKYHEYTSP NTTTKKMIDQ YQSALGVDIW STHYEKMQEN LKRLQEINNK
101: LRREIRQRTG EDMSGLNLQE LCHLQENITE SVAEIRERKY HVIKNQTDTC RKKVRNLEEQ HGNLVLDLEA KCEDPKYGVV ENEGHYNSAV AFANGVHNLY
201: AFRLQPLHPN LQNEEGFGSR DLRLS

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.