Factsheet for VIT_04s0023g02820.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009112	Potato	nucleus	52.29	71.11
Solyc02g084630.2.1	Tomato	nucleus	51.96	70.67
VIT_18s0001g13460.t01	Wine grape	nucleus	48.69	65.93
GSMUA_Achr9P20940_001	Banana	nucleus	21.57	64.71
GSMUA_Achr9P20950_001	Banana	nucleus	46.41	63.11
KRH76708	Soybean	nucleus	49.35	62.14
KRH28746	Soybean	nucleus	47.06	61.54
EER90370	Sorghum	nucleus	43.14	58.41
TraesCS7B01G286600.2	Wheat	nucleus	42.81	57.21
Zm00001d036425_P002	Maize	nucleus	42.16	56.83
TraesCS7D01G380300.1	Wheat	nucleus	42.16	56.83
Os06t0712700-01	Rice	nucleus	41.5	56.7
TraesCS7A01G383800.1	Wheat	nucleus	42.81	55.27
HORVU7Hr1G091210.4	Barley	nucleus, plastid	37.58	48.32
TraesCS6B01G159400.1	Wheat	nucleus	35.95	47.62
TraesCS6D01G120900.1	Wheat	nucleus	35.95	46.03
TraesCS6A01G131100.1	Wheat	nucleus	33.99	43.51
VIT_18s0001g01760.t01	Wine grape	nucleus	28.43	41.04
VIT_01s0011g01560.t01	Wine grape	nucleus	24.18	33.04
VIT_02s0025g02350.t01	Wine grape	nucleus	21.9	32.52
VIT_10s0042g00820.t01	Wine grape	nucleus	24.51	31.78

Protein Annotations

EntrezGene:100233014	wikigene:100233014	MapMan:15.5.14	Gene3D:3.40.1810.10	ProteinID:ABI98021	ProteinID:ABI98021.1
EMBL:AM476720	ProteinID:CAN66176	ProteinID:CAN66176.1	ProteinID:CCB44396	ProteinID:CCB44396.1	ncoils:Coil
EMBL:DQ979341	UniProt:F6GWR1	EMBL:FN594959	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100
InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF251	SMART:SM00432
SUPFAM:SSF55455	TIGR:TC54481	TIGR:TC55369	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf
EntrezGene:TM6	wikigene:TM6	UniParc:UPI00021091EE	ArrayExpress:VIT_04s0023g02820	EnsemblPlantsGene:VIT_04s0023g02820	EnsemblPlants:VIT_04s0023g02820.t01
unigene:Vvi.6711	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:19395299..19397804

Molecular Weight (calculated)

35347.3 Da

IEP (calculated)

9.527

GRAVY (calculated)

-0.685

Length

306 amino acids

Sequence
(BLAST)

001: MCCLKSKDPT PHVITLIPKE PFHGFGIQHS QLHYNLTFLA TYPIQKLIFL FPSSSSSSST YCALEPHYLI LEKKEGSKAR KMGRGKIEIK RIENPTNRQV
101: TYSKRRNGIF KKAQELTVLC DAKVSLIMFS NTGKFHEYTS PTITTKKVYD QYQKTLGIDL WSSHYERMQE NLRKLKEINN KLRREIRQRM GEDLGDLSIE
201: DLRGLEQKMD ASLGLVRERK YHVIKTQTET YRKKVRNLEE QHGNLLLNFE AKCDDPHYGL VENDGDYESA VAFANGASNL YAFRLHQAHP NLHHDGGYGS
301: HDLRLA

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.