Factsheet for Zm00001d036425_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006094_P001
Zm00001d010232_P001
Zm00001d010233_P004
Zm00001d021057_P001
Zm00001d031620_P001
Zm00001d036653_P001
Zm00001d042618_P001
Zm00001d046950_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54340.1	Zm00001d036653_P001	AT1G30950.1	18287201
AT3G54340.1	Zm00001d046950_P001	AT1G30950.1	18287201
AT3G54340.1	Zm00001d006094_P001	AT3G02310.1	15604664
AT3G54340.1	Zm00001d021057_P001	AT3G02310.1	15604664
AT3G54340.1	Zm00001d031620_P001	AT3G02310.1	15604664
AT3G54340.1	Zm00001d010232_P001	AT5G20240.1	15604664
AT3G54340.1	Zm00001d010233_P004	AT5G20240.1	15604664
AT3G54340.1	Zm00001d042618_P001	AT5G20240.1	15604664

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90370	Sorghum	nucleus	93.39	93.81
Os06t0712700-01	Rice	nucleus	88.99	90.18
TraesCS7B01G286600.2	Wheat	nucleus	88.99	88.21
TraesCS7D01G380300.1	Wheat	nucleus	88.11	88.11
TraesCS7A01G383800.1	Wheat	nucleus	88.55	84.81
GSMUA_Achr9P20940_001	Banana	nucleus	32.16	71.57
TraesCS6B01G159400.1	Wheat	nucleus	71.81	70.56
TraesCS6D01G120900.1	Wheat	nucleus	74.01	70.29
TraesCS6A01G131100.1	Wheat	nucleus	70.04	66.53
KRH61083	Soybean	nucleus	38.33	62.59
HORVU7Hr1G091210.4	Barley	nucleus, plastid	63.0	60.08
VIT_18s0001g13460.t01	Wine grape	nucleus	53.74	53.98
KRH25650	Soybean	nucleus	31.28	53.79
KRH66520	Soybean	nucleus	31.28	53.79
CDY69833	Canola	nucleus	41.85	53.67
Solyc02g084630.2.1	Tomato	nucleus	52.86	53.33
KRH07712	Soybean	nucleus	30.84	53.03
PGSC0003DMT400009112	Potato	nucleus	52.42	52.89
KRH51760	Soybean	nucleus	52.42	52.42
PGSC0003DMT400009510	Potato	nucleus	50.66	50.44
Solyc04g081000.2.1	Tomato	nucleus	50.22	50.0
CDX73487	Canola	nucleus	49.34	48.28
CDX76152	Canola	nucleus	47.58	48.21
Bra007067.1-P	Field mustard	nucleus	48.9	47.84
AT3G54340.1	Thale cress	nucleus	48.9	47.84
CDY13200	Canola	nucleus	47.14	47.77
Bra014822.1-P	Field mustard	nucleus	47.14	47.77
KRH28746	Soybean	nucleus	47.14	45.73
KRH76708	Soybean	nucleus	48.46	45.27
VIT_04s0023g02820.t01	Wine grape	nucleus	56.83	42.16
Zm00001d042618_P001	Maize	nucleus	37.44	37.78
Zm00001d018587_P001	Maize	nucleus	27.75	37.28
Zm00001d010232_P001	Maize	nucleus	34.36	36.79
Zm00001d015381_P001	Maize	nucleus	36.56	31.92
Zm00001d011748_P001	Maize	nucleus	27.31	31.47
Zm00001d003168_P001	Maize	nucleus	31.72	29.88
Zm00001d010233_P004	Maize	nucleus	33.48	29.69
Zm00001d018767_P001	Maize	nucleus	32.6	29.02
Zm00001d033701_P001	Maize	nucleus	29.07	27.27
Zm00001d041587_P001	Maize	nucleus	14.54	24.44
Zm00001d020114_P001	Maize	nucleus	23.79	24.0
Zm00001d043589_P002	Maize	plastid	28.63	23.64
Zm00001d031591_P001	Maize	nucleus	28.19	22.07
Zm00001d047742_P001	Maize	nucleus	29.96	19.94

Protein Annotations

MapMan:15.5.14	Gene3D:3.40.1810.10	EntrezGene:541799	EMBL:AF181479	ProteinID:AQK80975.1	EMBL:BT039988
ncoils:Coil	EMBL:EU966237	GO:GO:0000003	GO:GO:0000977	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0010093	GO:GO:0045944	GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487
InterPro:IPR036879	EMBL:KJ726948	InterPro:MADS_MEF2-like	PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404
PFscan:PS50066	PFscan:PS51297	PANTHER:PTHR11945	PANTHER:PTHR11945:SF251	UniProt:Q9M6N9	SMART:SM00432
SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox	InterPro:TF_MADSbox_sf	UniParc:UPI000004D328	EnsemblPlantsGene:Zm00001d036425
EnsemblPlants:Zm00001d036425_P002	EnsemblPlants:Zm00001d036425_T002	SEG:seg	:	:	:

Description

silky1Silky1

Coordinates

chr6:+:87897814..87902262

Molecular Weight (calculated)

25842.8 Da

IEP (calculated)

9.213

GRAVY (calculated)

-0.638

Length

227 amino acids

Sequence
(BLAST)

001: MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCSP GTDIKTIFDR YQQAIGTSLW IEQYENMQRT LSHLKDINRG
101: LRTEIRQRMG EDLDSLDFDE LRGLEQNVDA ALKEVRHRKY HVISTQTDTY KKKVKHSHEA YKNLQQELGM REDPAFGYVD NTGAGVAWDG AAAALGGAPP
201: DMYAFRVVPS QPNLHGMAYG FHDLRLG

Best Arabidopsis Sequence Match ( AT3G54340.1 )
(BLAST)

001: MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD ARVSIIMFSS SNKLHEYISP NTTTKEIVDL YQTISDVDVW ATQYERMQET KRKLLETNRN
101: LRTQIKQRLG ECLDELDIQE LRRLEDEMEN TFKLVRERKF KSLGNQIETT KKKNKSQQDI QKNLIHELEL RAEDPHYGLV DNGGDYDSVL GYQIEGSRAY
201: ALRFHQNHHH YYPNHGLHAP SASDIITFHL LE

Arabidopsis Description

AP3Floral homeotic protein APETALA 3 [Source:UniProtKB/Swiss-Prot;Acc:P35632]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.