Factsheet for Zm00001d018767_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003168_P001	Maize	nucleus	93.33	98.76
Zm00001d018587_P001	Maize	nucleus	61.96	93.49
OQU82318	Sorghum	nucleus	90.59	89.88
Zm00001d041587_P001	Maize	nucleus	41.96	79.26
Os04t0614100-00	Rice	nucleus	52.55	75.28
TraesCS2B01G440900.1	Wheat	nucleus	68.24	68.77
Zm00001d020114_P001	Maize	nucleus	56.47	64.0
TraesCS2D01G418800.2	Wheat	nucleus	67.84	63.84
TraesCS2A01G422400.2	Wheat	nucleus	67.84	63.6
HORVU2Hr1G098930.3	Barley	nucleus	67.06	61.96
Zm00001d033701_P001	Maize	nucleus	58.43	61.57
Zm00001d031591_P001	Maize	nucleus	60.78	53.45
GSMUA_Achr3P23580_001	Banana	nucleus	43.92	46.47
GSMUA_Achr2P02660_001	Banana	nucleus	43.53	46.25
Zm00001d047742_P001	Maize	nucleus	61.57	46.04
VIT_10s0042g00820.t01	Wine grape	nucleus	39.22	42.37
Zm00001d015381_P001	Maize	nucleus	43.14	42.31
VIT_01s0011g01560.t01	Wine grape	nucleus	34.12	38.84
VIT_02s0025g02350.t01	Wine grape	nucleus	30.2	37.38
Bra013028.1-P	Field mustard	nucleus	34.12	36.25
CDY02217	Canola	nucleus	34.12	36.25
CDY45758	Canola	nucleus	34.12	35.95
CDX87180	Canola	nucleus	33.73	35.1
CDY40800	Canola	nucleus	32.55	34.3
KRH40895	Soybean	nucleus	32.55	34.02
CDY69354	Canola	nucleus	32.16	33.88
Bra029365.1-P	Field mustard	nucleus	32.16	33.88
Zm00001d010232_P001	Maize	nucleus	27.84	33.49
KRG89112	Soybean	nucleus	31.76	33.06
AT5G23260.4	Thale cress	nucleus	34.51	32.84
Solyc11g005120.1.1	Tomato	nucleus	30.59	32.77
Zm00001d036425_P002	Maize	nucleus	29.02	32.6
Zm00001d042618_P001	Maize	nucleus	27.06	30.67
Zm00001d011748_P001	Maize	nucleus	22.75	29.44
Zm00001d010233_P004	Maize	nucleus	27.06	26.95
CDY16841	Canola	nucleus	33.33	26.73
Bra026507.1-P	Field mustard	nucleus	32.16	26.2
Zm00001d043589_P002	Maize	plastid	23.53	21.82

Protein Annotations

EntrezGene:103631929	MapMan:15.5.14	Gene3D:3.40.1810.10	UniProt:A0A1D6HRZ7	ncoils:Coil	GO:GO:0000977
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0045944
GO:GO:0046983	InterPro:IPR002100	InterPro:IPR002487	InterPro:IPR036879	InterPro:MADS_MEF2-like	ProteinID:ONM51250.1
PFAM:PF00319	PFAM:PF01486	PRINTS:PR00404	ScanProsite:PS00350	PFscan:PS50066	PFscan:PS51297
PANTHER:PTHR11945	PANTHER:PTHR11945:SF210	SMART:SM00432	SUPFAM:SSF55455	InterPro:TF_Kbox	InterPro:TF_MADSbox
InterPro:TF_MADSbox_sf	UniParc:UPI0004DEBB28	EnsemblPlantsGene:Zm00001d018767	EnsemblPlants:Zm00001d018767_P001	EnsemblPlants:Zm00001d018767_T001	SEG:seg

Description

Protein TRANSPARENT TESTA 16

Coordinates

chr7:-:4697688..4699777

Molecular Weight (calculated)

29339.4 Da

IEP (calculated)

8.656

GRAVY (calculated)

-0.563

Length

255 amino acids

Sequence
(BLAST)

001: MGRGKVELKK IENPTNRQVT FSKRRMGLFK KANELAILCD AQIGVIIFSG SGRMYEYSSP PWRIASVFDR YLKAPSTRFE EMDIQQKIVQ EMTRMKDERN
101: RLRMIMAQYM AEDLASFSAQ DLSNLEQQIE FSLYKVRLRK QELLDQQLLE IRQREMHMPA EQSGYLCLMN PAAAIASGQH QQAGEMVGIN PRPFPWWDVG
201: ASGSGSQSQQ LLLHDRDATE SSMTALGLSP QMHGYRLQPR QPNLQQDADI HGWLW

Best Arabidopsis Sequence Match ( AT5G23260.2 )
(BLAST)

001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KNELMQQQLE NLSRKRRMLE EDNNNMYRWL HEHRAAMEFQ QAGIDTKPGE YQQFIEQLQC
201: YKPGEYQQFL EQQQQQPNSV LQLATLPSEI DPTYNLQLAQ PNLQNDPTAQ ND

Arabidopsis Description

TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.