Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G418800.2 | Wheat | nucleus | 96.32 | 96.68 |
| TraesCS2B01G440900.1 | Wheat | nucleus | 87.5 | 94.07 |
| HORVU2Hr1G098930.3 | Barley | nucleus | 85.66 | 84.42 |
| Os04t0614100-00 | Rice | nucleus | 53.31 | 81.46 |
| Zm00001d018587_P001 | Maize | nucleus | 47.43 | 76.33 |
| OQU82318 | Sorghum | nucleus | 65.81 | 69.65 |
| Zm00001d018767_P001 | Maize | nucleus | 63.6 | 67.84 |
| Zm00001d003168_P001 | Maize | nucleus | 59.19 | 66.81 |
| Zm00001d033701_P001 | Maize | nucleus | 45.96 | 51.65 |
| Zm00001d041587_P001 | Maize | nucleus | 23.9 | 48.15 |
| GSMUA_Achr2P02660_001 | Banana | nucleus | 42.28 | 47.92 |
| GSMUA_Achr3P23580_001 | Banana | nucleus | 41.91 | 47.3 |
| Zm00001d020114_P001 | Maize | nucleus | 37.5 | 45.33 |
| Zm00001d031591_P001 | Maize | nucleus | 48.16 | 45.17 |
| TraesCS6A01G158100.1 | Wheat | nucleus | 41.18 | 44.44 |
| VIT_10s0042g00820.t01 | Wine grape | nucleus | 37.87 | 43.64 |
| Zm00001d047742_P001 | Maize | nucleus | 49.63 | 39.59 |
| VIT_01s0011g01560.t01 | Wine grape | nucleus | 30.88 | 37.5 |
| CDY45758 | Canola | nucleus | 32.72 | 36.78 |
| Bra013028.1-P | Field mustard | nucleus | 32.35 | 36.67 |
| CDY02217 | Canola | nucleus | 32.35 | 36.67 |
| VIT_02s0025g02350.t01 | Wine grape | nucleus | 27.57 | 36.41 |
| TraesCS3A01G090900.1 | Wheat | nucleus | 30.15 | 36.12 |
| CDX87180 | Canola | nucleus | 32.35 | 35.92 |
| TraesCS3A01G090300.1 | Wheat | nucleus | 29.04 | 35.11 |
| TraesCS7A01G475000.1 | Wheat | nucleus | 29.04 | 35.11 |
| Bra029365.1-P | Field mustard | nucleus | 30.88 | 34.71 |
| CDY69354 | Canola | nucleus | 30.88 | 34.71 |
| CDY40800 | Canola | nucleus | 30.51 | 34.3 |
| KRG89112 | Soybean | nucleus | 30.15 | 33.47 |
| KRH40895 | Soybean | nucleus | 29.78 | 33.2 |
| AT5G23260.4 | Thale cress | nucleus | 31.99 | 32.46 |
| Solyc11g005120.1.1 | Tomato | nucleus | 28.31 | 32.35 |
| TraesCS1A01G264300.1 | Wheat | nucleus | 24.63 | 32.21 |
| TraesCS7A01G383800.1 | Wheat | nucleus | 27.21 | 31.22 |
| TraesCS3A01G406500.2 | Wheat | nucleus | 23.9 | 31.1 |
| TraesCS3A01G284400.1 | Wheat | nucleus | 22.79 | 29.11 |
| CDY16841 | Canola | nucleus | 32.72 | 27.99 |
| Bra026507.1-P | Field mustard | nucleus | 31.99 | 27.8 |
| TraesCS6A01G131100.1 | Wheat | nucleus | 24.26 | 27.62 |
Protein Annotations
| MapMan:15.5.14 | Gene3D:3.40.1810.10 | GO:GO:0000977 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0045944 | GO:GO:0046983 | InterPro:IPR002100 | InterPro:IPR002487 | InterPro:IPR036879 |
| InterPro:MADS_MEF2-like | PFAM:PF00319 | PFAM:PF01486 | PRINTS:PR00404 | ScanProsite:PS00350 | PFscan:PS50066 |
| PFscan:PS51297 | PANTHER:PTHR11945 | PANTHER:PTHR11945:SF210 | SMART:SM00432 | SUPFAM:SSF55455 | InterPro:TF_Kbox |
| InterPro:TF_MADSbox | InterPro:TF_MADSbox_sf | EnsemblPlantsGene:TraesCS2A01G422400 | EnsemblPlants:TraesCS2A01G422400.2 | TIGR:cd00265 | SEG:seg |
Description
No Description!
Coordinates
chr2A:-:677481775..677483602
Molecular Weight (calculated)
31504.4 Da
IEP (calculated)
8.113
GRAVY (calculated)
-0.440
Length
272 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGKVELKK IENTTSRQVT FSKRRMGLLK KANELAILCD AQVGVIVFSG SGKMYEYASP PWRIANIFDR YLKAPSTRFD EMDVQQKIIH EMTRMKDESN
101: RLKIIMRQYM GEDLGSLTLQ DVSNLEQQIE FSLYKVRLRK QQLLDQQLLE MRQREMHMSE DQSSSYMFHM VTHLSLISPC QVILCCNLLT LDEFACVCQK
201: KNPARDQPGQ SADVMNPKLF PLWDVGDQIY GQDAESSMTA LKLSPQLQEY KLQPVQPNLQ EGNLHGYVLR LW
101: RLKIIMRQYM GEDLGSLTLQ DVSNLEQQIE FSLYKVRLRK QQLLDQQLLE MRQREMHMSE DQSSSYMFHM VTHLSLISPC QVILCCNLLT LDEFACVCQK
201: KNPARDQPGQ SADVMNPKLF PLWDVGDQIY GQDAESSMTA LKLSPQLQEY KLQPVQPNLQ EGNLHGYVLR LW
001: MGRGKIEIKK IENQTARQVT FSKRRTGLIK KTRELSILCD AHIGLIVFSA TGKLSEFCSE QNRMPQLIDR YLHTNGLRLP DHHDDQEQLH HEMELLRRET
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ
201: QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND
101: CNLELRLRPF HGHDLASIPP NELDGLERQL EHSVLKVRER KRRMLEEDNN NMYRWLHEHR AAMEFQQAGI DTKPGEYQQF IEQLQCYKPG EYQQFLEQQQ
201: QQPNSVLQLA TLPSEIDPTY NLQLAQPNLQ NDPTAQND
Arabidopsis Description
TT16K-box region and MADS-box transcription factor family protein [Source:TAIR;Acc:AT5G23260]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.