Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032085.1-P | Field mustard | nucleus | 96.03 | 93.8 |
| CDY20324 | Canola | nucleus | 90.08 | 87.98 |
| CDY68667 | Canola | cytosol | 45.63 | 76.67 |
| CDX76805 | Canola | nucleus | 70.24 | 72.54 |
| AT2G24550.1 | Thale cress | nucleus | 68.25 | 70.2 |
| CDY23302 | Canola | nucleus | 46.43 | 53.18 |
| CDY36435 | Canola | nucleus | 45.63 | 52.27 |
| CDX72307 | Canola | nucleus | 40.87 | 48.13 |
| CDY13436 | Canola | nucleus | 40.48 | 47.66 |
| CDY19822 | Canola | nucleus | 38.1 | 41.56 |
| CDY05462 | Canola | nucleus | 35.32 | 41.4 |
| CDX88142 | Canola | nucleus | 36.9 | 40.97 |
| CDX87106 | Canola | nucleus | 36.9 | 40.43 |
| CDY05394 | Canola | nucleus | 34.52 | 39.73 |
| CDY55465 | Canola | nucleus | 36.51 | 39.32 |
| VIT_01s0113g00410.t01 | Wine grape | mitochondrion, nucleus | 25.4 | 37.21 |
| KRH61944 | Soybean | nucleus | 33.33 | 33.07 |
| KRH52604 | Soybean | nucleus | 32.54 | 32.54 |
| Solyc08g068970.2.1 | Tomato | nucleus | 21.43 | 30.51 |
| GSMUA_Achr3P05640_001 | Banana | nucleus | 28.17 | 30.47 |
| EER88891 | Sorghum | nucleus | 26.59 | 30.45 |
| GSMUA_Achr9P13850_001 | Banana | nucleus | 26.59 | 29.78 |
| Zm00001d014648_P001 | Maize | nucleus | 20.63 | 28.57 |
| PGSC0003DMT400086234 | Potato | nucleus | 19.84 | 28.41 |
| GSMUA_Achr7P15940_001 | Banana | nucleus | 24.21 | 27.6 |
| EER99130 | Sorghum | nucleus | 27.38 | 26.85 |
| Os08t0516900-01 | Rice | nucleus, plasma membrane | 27.78 | 26.82 |
| TraesCS7D01G416800.1 | Wheat | nucleus | 23.81 | 26.79 |
| TraesCS5B01G277200.1 | Wheat | nucleus | 26.19 | 26.72 |
| TraesCS5D01G284800.1 | Wheat | nucleus | 26.19 | 26.72 |
| TraesCS7B01G325100.1 | Wheat | nucleus | 23.81 | 26.55 |
| TraesCS7A01G424800.1 | Wheat | nucleus | 23.41 | 25.99 |
| Os06t0698748-02 | Rice | nucleus | 23.41 | 25.88 |
| TraesCS7A01G254500.1 | Wheat | mitochondrion, nucleus | 28.17 | 25.72 |
| TraesCS5A01G277500.1 | Wheat | nucleus | 25.4 | 25.5 |
| Zm00001d036499_P001 | Maize | nucleus | 21.83 | 25.35 |
| Zm00001d021006_P001 | Maize | nucleus | 25.79 | 25.19 |
| Zm00001d006059_P001 | Maize | nucleus | 26.19 | 25.19 |
| TraesCS7D01G253100.1 | Wheat | mitochondrion, nucleus | 27.38 | 25.09 |
| TraesCS7B01G150700.1 | Wheat | mitochondrion, nucleus | 27.38 | 24.91 |
| HORVU7Hr1G052580.1 | Barley | nucleus | 26.98 | 24.82 |
| Os09t0499000-01 | Rice | nucleus | 25.4 | 24.71 |
| Zm00001d049768_P001 | Maize | nucleus | 24.6 | 23.85 |
| KXG25581 | Sorghum | nucleus | 25.79 | 23.38 |
| Zm00001d031545_P001 | Maize | nucleus | 25.0 | 23.16 |
| KRH04949 | Soybean | extracellular, vacuole | 29.37 | 23.05 |
| HORVU5Hr1G075200.2 | Barley | golgi, plastid | 24.6 | 18.84 |
Protein Annotations
| EnsemblPlants:CDY45582 | EnsemblPlantsGene:GSBRNA2T00082305001 | PANTHER:PTHR33172 | PANTHER:PTHR33172:SF15 | ProteinID:CDY45582 | ProteinID:CDY45582.1 |
| SEG:seg | UniParc:UPI0004EE58E5 | UniProt:A0A078I668 | MapMan:35.2 | : | : |
Description
BnaA04g14490DBnaA04g14490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I668]
Coordinates
chrLK032629:-:15406..16880
Molecular Weight (calculated)
27799.2 Da
IEP (calculated)
4.724
GRAVY (calculated)
-0.824
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVMVGSPFG IGMAACVRDR TGVSAQDKTV PAAALFSADE SGRGGSQIGL ARRIGLRMNK RSPEESSEDS SSSIGECSEN EEEEEDDAVS FQRGGGGTLV
101: SFTSSLEDSL PIKRGLSNHY VGKSKSFGNL MESTNINAKD LEKGENPFNK RRRLLIANKL RSRGRSMSVS NFYSWQNPNS MSLLAVQEHN EVNHHNDDDY
201: EENEGGDHQT MKLLEKRNML MKNKRDLMAQ TQSCFCLSSL QEDDDEGGVD NE
101: SFTSSLEDSL PIKRGLSNHY VGKSKSFGNL MESTNINAKD LEKGENPFNK RRRLLIANKL RSRGRSMSVS NFYSWQNPNS MSLLAVQEHN EVNHHNDDDY
201: EENEGGDHQT MKLLEKRNML MKNKRDLMAQ TQSCFCLSSL QEDDDEGGVD NE
001: MEVMVGSSFG IGMAAYVRDH RGVSAQDKAV QTALFLADES GRGGSQIGIG LRMSNNNNKS PEESSDSSSS IGESSENEEE EEEDDAVSCQ RGTLDSFSSS
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
101: LEDSLPIKRG LSNHYVGKSK SFGNLMEAAS KAKDLEKVEN PFNKRRRLVI ANKLRRRGRS MSASNFYSWQ NPNSMPLLAL QEPNEEDHHI HNDDYEDDDG
201: DGDDHRKIMM MMKNKKELMA QTRSCFCLSS LQEEDDGDGD DDEDE
Arabidopsis Description
At2g24550/F25P17.15 [Source:UniProtKB/TrEMBL;Acc:Q945P6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.