Factsheet for Os02t0580400-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07042	Sorghum	cytosol, mitochondrion	70.35	69.31
VIT_01s0011g05480.t01	Wine grape	cytosol	43.72	68.5
Zm00001d050905_P001	Maize	cytosol	65.33	67.01
PGSC0003DMT400081918	Potato	cytosol	42.21	64.62
KRH60372	Soybean	cytosol	42.71	63.91
KRH41675	Soybean	cytosol	42.71	63.91
Os04t0462600-01	Rice	cytosol	60.8	63.68
KRH08469	Soybean	cytosol	41.21	63.08
Solyc01g005460.2.1	Tomato	cytosol	41.21	63.08
KRH70126	Soybean	cytosol	41.71	62.41
TraesCS6D01G189000.1	Wheat	cytosol	64.32	61.54
TraesCS6B01G224400.1	Wheat	cytosol	63.82	61.35
CDY41457	Canola	cytosol	39.7	60.77
GSMUA_Achr7P12500_001	Banana	cytosol	44.22	60.69
GSMUA_Achr1P20660_001	Banana	cytosol	41.21	60.29
CDX91705	Canola	cytosol	39.2	60.0
Bra012367.1-P	Field mustard	cytosol	38.69	59.23
AT1G23220.1	Thale cress	cytosol	38.19	58.91
CDY21425	Canola	cytosol	38.19	58.46
Bra024572.1-P	Field mustard	cytosol	38.19	58.46
CDY04736	Canola	cytosol	38.19	58.46
CDY25775	Canola	cytosol	38.69	56.2
CDY12479	Canola	cytosol	38.69	56.2
GSMUA_Achr9P27210_001	Banana	nucleus	42.71	55.92
Os02t0733001-00	Rice	cytosol, mitochondrion, peroxisome	44.22	55.0
Zm00001d016977_P002	Maize	cytosol	65.83	49.43
Os02t0269200-01	Rice	cytosol	18.59	37.37
Os01t0256400-01	Rice	cytosol, nucleus	20.6	31.54
Os01t0555600-00	Rice	cytosol	27.64	25.82
Os06t0492700-00	Rice	endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	12.56	18.12

Protein Annotations

Gene3D:3.30.740.10	MapMan:35.2	EntrezGene:4329776	EMBL:AK103053	EMBL:AK111125	ProteinID:BAD27626.1
ProteinID:BAD29579.1	ProteinID:BAF09149.1	ProteinID:BAF14918.1	ProteinID:BAS79414.1	ProteinID:BAS89564.1	InterPro:DLC_sf
InterPro:Dynein_light_chain_typ-1/2	ProteinID:EEE61137.1	GO:GO:0003674	GO:GO:0003774	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005868
GO:GO:0006810	GO:GO:0007017	GO:GO:0008092	GO:GO:0008150	GO:GO:0008574	GO:GO:0009987
GO:GO:0010970	GO:GO:0016043	GO:GO:0016787	GO:GO:0030286	GO:GO:0045505	GO:GO:0051959
GO:GO:0060271	GO:GO:2000582	InterPro:IPR037177	EnsemblPlantsGene:Os02g0580400	EnsemblPlants:Os02t0580400-01	PFAM:PF01221
PANTHER:PTHR11886	PANTHER:PTHR11886:SF53	UniProt:Q6EP41	SMART:SM01375	SUPFAM:SSF54648	UniParc:UPI00003CE47A
RefSeq:XP_015623651.1	SEG:seg	:	:	:	:

Description

Dynein light chain, type 1 family protein. (Os02t0580400-01)

Coordinates

chr2:-:22339538..22343500

Molecular Weight (calculated)

21656.3 Da

IEP (calculated)

10.061

GRAVY (calculated)

-0.452

Length

199 amino acids

Sequence
(BLAST)

001: MDPASEELEQ RSRYLSSLIR RTKLHAAPAL APPPPTPPPE PETKLQLEME PQPERVEEAA KKPAAVAAVV EKREVKGGGG GGGQAGKGKG KEKEMEKGKE
101: ERKVSVRVRA ADMPLAMQRR AVRLAFDAVA AMPRLDSKRL ALALKKEFDA TYGPAWHCIV GTGFGSYVTH SVGGFLYFSV DKVYVLLFRT AVEPLGHPQ

Best Arabidopsis Sequence Match ( AT1G23220.1 )
(BLAST)

001: MEGVELELER RSKFLNSLIQ KKKAKEQQDQ KDEFNVRVRA SDMPLPQQNR AFSLSREILN ATPGKADNKR LAHALKKDFD SAYGPAWHCI VGTSFGSYVT
101: HSTGGFLYFQ IDKVYVLLFK TAVEPLDQK

Arabidopsis Description

Dynein light chain type 1 family protein [Source:UniProtKB/TrEMBL;Acc:Q9LR39]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.