Factsheet for Bra040398.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001598.1-P
Bra001634.1-P
Bra001670.1-P
Bra002327.1-P
Bra002729.1-P
Bra003484.1-P
Bra007661.1-P
Bra011082.1-P
Bra012190.1-P
Bra013748.1-P
Bra014303.1-P
Bra014411.1-P
Bra015289.1-P
Bra016492.1-P
Bra018938.1-P
Bra019255.1-P
Bra020125.1-P
Bra021117.1-P
Bra021184.1-P
Bra021257.1-P
Bra022164.1-P
Bra022224.1-P
Bra024406.1-P
Bra025775.1-P
Bra026166.1-P
Bra027232.1-P
Bra028110.1-P
Bra035185.1-P
Bra037824.1-P
Bra039732.1-P
Bra040122.1-P
Bra040398.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04730.1	Bra015289.1-P	AT1G04100.1	21734647
AT3G04730.1	Bra026166.1-P	AT1G15050.1	21734647
AT3G04730.1	Bra012190.1-P	AT1G19850.1	21734647
AT3G04730.1	Bra016492.1-P	AT1G19850.1	21734647
AT3G04730.1	Bra025775.1-P	AT1G19850.1	21734647
AT3G04730.1	Bra014303.1-P	AT1G51950.1	21734647
AT3G04730.1	Bra018938.1-P	AT1G51950.1	21734647
AT3G04730.1	Bra035185.1-P	AT1G80390.1	21734647
AT3G04730.1	Bra040122.1-P	AT3G04730.1	21734647
AT3G04730.1	Bra040398.1-P	AT3G04730.1	21734647
AT3G04730.1	Bra001598.1-P	AT3G15540.1	21798944
AT3G04730.1	Bra021117.1-P	AT3G15540.1	21798944
AT3G04730.1	Bra027232.1-P	AT3G15540.1	21798944
AT3G04730.1	Bra001634.1-P	AT3G16500.1	21734647
AT3G04730.1	Bra021184.1-P	AT3G16500.1	21734647
AT3G04730.1	Bra022164.1-P	AT3G16500.1	21734647
AT3G04730.1	Bra001670.1-P	AT3G17600.1	21734647
AT3G04730.1	Bra021257.1-P	AT3G17600.1	21734647
AT3G04730.1	Bra022224.1-P	AT3G17600.1	21734647
AT3G04730.1	Bra003484.1-P	AT3G62100.1	21734647
AT3G04730.1	Bra007661.1-P	AT3G62100.1	21734647
AT3G04730.1	Bra014411.1-P	AT3G62100.1	21734647
AT3G04730.1	Bra039732.1-P	AT4G14560.1	9342315
AT3G04730.1	Bra013748.1-P	AT4G23980.1	21734647
AT3G04730.1	Bra019255.1-P	AT4G23980.1	21734647
AT3G04730.1	Bra011082.1-P	AT4G29080.1	21798944
AT3G04730.1	Bra002327.1-P	AT5G20730.1	21734647
AT3G04730.1	Bra020125.1-P	AT5G20730.1	21734647
AT3G04730.1	Bra028110.1-P	AT5G37020.1	21734647
AT3G04730.1	Bra002729.1-P	AT5G57420.1	21734647
AT3G04730.1	Bra024406.1-P	AT5G65670.1	21734647
AT3G04730.1	Bra037824.1-P	AT5G65670.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41894	Canola	cytosol, nucleus, plastid	97.4	97.4
AT3G04730.1	Thale cress	cytosol, nucleus, plastid	93.94	91.95
Bra040122.1-P	Field mustard	nucleus	85.71	88.0
CDY50750	Canola	nucleus, plastid	99.13	78.69
Bra001900.1-P	Field mustard	cytosol, nucleus, plastid	64.5	62.87
Bra033886.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	65.8	62.81
Bra039855.1-P	Field mustard	nucleus	62.77	62.23
Bra032520.1-P	Field mustard	nucleus	60.61	61.67
GSMUA_Achr10P...	Banana	nucleus	64.07	61.41
Bra030560.1-P	Field mustard	nucleus	60.61	61.14
Bra015298.1-P	Field mustard	nucleus	58.87	60.71
GSMUA_Achr8P20610_001	Banana	nucleus	63.2	59.84
GSMUA_Achr9P10700_001	Banana	nucleus	60.61	58.09
GSMUA_Achr4P21020_001	Banana	nucleus	61.9	57.66
GSMUA_Achr9P25550_001	Banana	nucleus	60.61	57.61
TraesCS5A01G058600.1	Wheat	nucleus	62.77	57.31
TraesCS5B01G058500.1	Wheat	nucleus	62.34	57.14
TraesCS5D01G069300.1	Wheat	nucleus	61.9	56.75
TraesCS5D01G392000.1	Wheat	nucleus	54.11	53.88
Bra026755.1-P	Field mustard	nucleus	36.36	53.85
TraesCS5A01G382600.1	Wheat	nucleus	54.11	53.65
EER90896	Sorghum	nucleus	54.55	53.62
TraesCS5B01G386800.1	Wheat	nucleus	54.11	53.42
Os03t0742900-01	Rice	vacuole	54.55	53.39
Bra001899.1-P	Field mustard	nucleus	39.39	53.22
Bra033890.1-P	Field mustard	nucleus	39.39	52.91
Zm00001d033976_P002	Maize	nucleus	54.11	52.74
Bra023771.1-P	Field mustard	nucleus	38.96	52.63
HORVU5Hr1G014300.4	Barley	nucleus	62.77	52.54
HORVU5Hr1G094220.1	Barley	nucleus	53.68	52.32
EES17334	Sorghum	cytosol	63.64	52.31
Bra032521.1-P	Field mustard	nucleus	40.69	52.22
Zm00001d013302_P002	Maize	nucleus	51.52	52.19
Bra015297.1-P	Field mustard	cytosol, nucleus, plastid	41.99	52.15
Bra027504.1-P	Field mustard	nucleus	42.86	51.83
TraesCS5B01G381900.1	Wheat	cytosol, mitochondrion, nucleus	56.71	51.78
Os03t0633500-01	Rice	cytosol	51.95	51.5
Os12t0601300-01	Rice	nucleus	61.04	50.9
GSMUA_Achr4P22520_001	Banana	nucleus	54.98	50.2
Bra001598.1-P	Field mustard	nucleus	41.99	50.0
OQU91311	Sorghum	cytosol, mitochondrion, nucleus	57.14	50.0
Bra037824.1-P	Field mustard	plastid	41.99	49.74
Bra039732.1-P	Field mustard	nucleus	36.8	49.71
Bra027232.1-P	Field mustard	nucleus	41.13	48.97
Bra021117.1-P	Field mustard	cytosol, nucleus, plastid	40.26	47.21
Bra024406.1-P	Field mustard	nucleus	45.45	45.06
HORVU5Hr1G093580.2	Barley	cytosol, nucleus, peroxisome	54.55	44.84
Bra011082.1-P	Field mustard	nucleus	54.11	43.1
Bra018993.1-P	Field mustard	nucleus	36.36	41.38
Bra030219.1-P	Field mustard	nucleus	47.62	41.35
TraesCS5D01G388300.2	Wheat	cytosol	55.84	40.95
TraesCS5A01G378300.2	Wheat	cytosol, mitochondrion, nucleus	53.68	40.66
Zm00001d041416_P001	Maize	nucleus	60.17	40.41
Bra031850.1-P	Field mustard	mitochondrion	48.48	38.36

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	EnsemblPlantsGene:Bra040398	EnsemblPlants:Bra040398.1
EnsemblPlants:Bra040398.1-P	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734
GO:GO:0009987	InterPro:IPR000270	UniProt:M4FH20	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745
PANTHER:PTHR31734	PANTHER:PTHR31734:SF28	SUPFAM:SSF54277	UniParc:UPI00015D98EB	SEG:seg	:

Description

AT3G04730 (E=9e-108) IAA16 | IAA16; transcription factor

Coordinates

chrScaffold000203:-:23309..24845

Molecular Weight (calculated)

25155.1 Da

IEP (calculated)

8.975

GRAVY (calculated)

-0.458

Length

231 amino acids

Sequence
(BLAST)

001: MINFEATELR LGLPGGNHGG DMAMKNNGKR GFSETVDLKL NLSSTALDSV SGVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TAGDATEGTE
101: KTSSSNGATS SAAAYVKVSM DGAPYLRKID LKLYKTYQDL SDALSKMFSS FTLGNYGPQG MKDFMNESRL IDLLNGSDYV PTYEDKDGDW MLVGDVPWGM
201: FVDSCKRIRI MKGSEAIGLA PRALEKCKNR S

Best Arabidopsis Sequence Match ( AT3G04730.1 )
(BLAST)

001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS

Arabidopsis Description

IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.