Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | nucleus | 86.48 | 87.55 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 84.02 | 84.36 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 81.97 | 82.99 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 77.87 | 76.61 |
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 53.28 | 76.47 |
| PGSC0003DMT400041976 | Potato | nucleus | 61.48 | 70.42 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 69.26 | 69.55 |
| VIT_07s0141g00290.t01 | Wine grape | cytosol, nucleus, plastid | 66.8 | 68.49 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 70.9 | 68.38 |
| Solyc06g053830.2.1 | Tomato | nucleus | 61.07 | 68.35 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 70.49 | 68.25 |
| CDY10694 | Canola | mitochondrion | 48.36 | 67.82 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 70.08 | 67.59 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 69.67 | 67.46 |
| Solyc09g083290.2.1 | Tomato | nucleus | 65.16 | 67.37 |
| Solyc06g008590.2.1 | Tomato | nucleus | 57.38 | 67.31 |
| PGSC0003DMT400015610 | Potato | nucleus | 64.75 | 66.39 |
| KRH34377 | Soybean | nucleus | 63.93 | 65.27 |
| PGSC0003DMT400013627 | Potato | nucleus | 56.97 | 64.95 |
| KRG92683 | Soybean | nucleus | 59.84 | 64.32 |
| Os12t0601300-01 | Rice | nucleus | 72.54 | 63.9 |
| EES17334 | Sorghum | cytosol | 73.36 | 63.7 |
| Bra040398.1-P | Field mustard | nucleus | 59.84 | 63.2 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 71.31 | 63.04 |
| Bra033886.1-P | Field mustard | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 62.3 | 62.81 |
| AT3G04730.1 | Thale cress | cytosol, nucleus, plastid | 60.66 | 62.71 |
| CDY41894 | Canola | cytosol, nucleus, plastid | 59.02 | 62.34 |
| CDY47148 | Canola | nucleus | 59.43 | 62.23 |
| Os03t0633500-01 | Rice | cytosol | 59.43 | 62.23 |
| Bra001900.1-P | Field mustard | cytosol, nucleus, plastid | 60.25 | 62.03 |
| CDX92973 | Canola | cytosol, nucleus, plastid | 60.25 | 62.03 |
| KRH67289 | Soybean | nucleus | 64.34 | 61.81 |
| CDY62130 | Canola | cytosol, nucleus, plastid | 59.02 | 61.8 |
| Bra039855.1-P | Field mustard | nucleus | 59.02 | 61.8 |
| KRH68738 | Soybean | nucleus | 61.48 | 61.73 |
| CDY18214 | Canola | nucleus | 56.56 | 61.61 |
| KRG96977 | Soybean | nucleus | 57.79 | 61.3 |
| KRH32099 | Soybean | nucleus | 62.3 | 61.29 |
| CDX89832 | Canola | nucleus | 56.15 | 61.16 |
| AT1G04250.1 | Thale cress | cytosol, nucleus, plastid | 57.38 | 61.14 |
| KRG95616 | Soybean | nucleus | 63.11 | 61.11 |
| CDY10349 | Canola | endoplasmic reticulum, extracellular | 61.48 | 60.98 |
| AT3G23050.1 | Thale cress | cytosol, nucleus, plastid | 60.66 | 60.91 |
| Bra032520.1-P | Field mustard | nucleus | 56.56 | 60.79 |
| Bra015298.1-P | Field mustard | nucleus | 55.74 | 60.71 |
| CDY15493 | Canola | cytosol, nucleus, plastid | 56.97 | 60.7 |
| Bra030560.1-P | Field mustard | nucleus | 56.97 | 60.7 |
| PGSC0003DMT400050101 | Potato | cytosol, nucleus, plastid | 61.89 | 60.64 |
| CDY32537 | Canola | nucleus | 56.56 | 60.53 |
| CDY21111 | Canola | cytosol, nucleus, plastid | 58.2 | 60.17 |
| Solyc01g097290.2.1 | Tomato | nucleus | 61.89 | 60.16 |
| CDY10068 | Canola | cytosol, nucleus, plastid | 56.15 | 60.09 |
| CDY63910 | Canola | cytosol, nucleus, plastid | 59.02 | 60.0 |
| CDY30781 | Canola | cytosol, nucleus, plastid | 59.02 | 60.0 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 61.89 | 59.68 |
| AT4G14550.2 | Thale cress | nucleus | 56.97 | 59.4 |
| Bra040122.1-P | Field mustard | nucleus | 54.51 | 59.11 |
| CDY30017 | Canola | cytosol, nucleus, plastid | 56.97 | 58.65 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 61.48 | 56.82 |
| GSMUA_Achr9P10690_001 | Banana | cytosol, mitochondrion, nucleus | 31.15 | 55.88 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 28.28 | 55.2 |
| KRH34091 | Soybean | cytosol, nucleus, plastid | 52.05 | 54.98 |
| KRH71337 | Soybean | nucleus | 37.3 | 53.53 |
| GSMUA_Achr5P03110_001 | Banana | nucleus | 35.66 | 51.79 |
| GSMUA_Achr4P22530_001 | Banana | nucleus | 38.11 | 51.38 |
| GSMUA_Achr2P15340_001 | Banana | nucleus | 51.23 | 51.02 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 58.2 | 50.53 |
| CDY50750 | Canola | nucleus, plastid | 60.25 | 50.52 |
| GSMUA_Achr4P21030_001 | Banana | nucleus | 40.16 | 49.49 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 34.43 | 49.12 |
| Zm00001d041416_P001 | Maize | nucleus | 68.85 | 48.84 |
| GSMUA_Achr9P02960_001 | Banana | nucleus | 41.39 | 48.79 |
| GSMUA_Achr11P... | Banana | nucleus | 34.43 | 48.28 |
| GSMUA_AchrUn_... | Banana | nucleus | 43.03 | 47.95 |
| KRG92429 | Soybean | cytosol, nucleus, plastid | 64.34 | 47.43 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 59.84 | 46.35 |
| GSMUA_Achr8P20620_001 | Banana | nucleus | 35.66 | 46.28 |
| GSMUA_Achr10P... | Banana | nucleus | 52.05 | 45.68 |
| GSMUA_Achr10P... | Banana | nucleus | 51.64 | 45.32 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 56.56 | 45.25 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 45.08 | 44.35 |
| GSMUA_Achr2P12630_001 | Banana | nucleus | 36.89 | 44.34 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 48.36 | 44.19 |
| GSMUA_Achr9P06290_001 | Banana | nucleus | 49.59 | 44.16 |
| GSMUA_Achr10P... | Banana | nucleus | 52.46 | 43.84 |
| GSMUA_Achr3P03400_001 | Banana | nucleus | 52.87 | 41.35 |
| GSMUA_Achr6P26730_001 | Banana | nucleus | 46.72 | 40.86 |
| GSMUA_Achr4P08960_001 | Banana | nucleus | 42.62 | 38.24 |
| CDY63072 | Canola | nucleus | 58.2 | 35.68 |
| GSMUA_Achr7P13250_001 | Banana | nucleus | 39.75 | 32.66 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr8G20610_001 | EnsemblPlants:GSMUA_Achr8P20610_001 |
| EnsemblPlants:GSMUA_Achr8T20610_001 | InterPro:IPR000270 | UniProt:M0TS64 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 | UniParc:UPI00029599F2 | SEG:seg | : |
Description
Auxin-responsive protein IAA30 [Source:GMGC_GENE;Acc:GSMUA_Achr8G20610_001]
Coordinates
chr8:-:25749034..25751364
Molecular Weight (calculated)
26453.7 Da
IEP (calculated)
8.426
GRAVY (calculated)
-0.438
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGLGLEET ELRLGLPGGG GGGGDAEAVK NSGKRGFAET VDLKLQLQTP VDVKEAVAEA ASEKVKRSVS QKSLVSCGSD PEKPSAPKAQ VVGWPPVRSF
101: RKNILSVNSE KGSKEEGEKS SISAAFVKVS MDGAPYLRKV DLKMYRSYQE LFMALQKMFI SFTGGNYGSQ GLSGRDFMNE SKVMDLLNGS EYVPTYEDKD
201: GDWMLVGDVP WEMFVDSCKR LRIMKGSEAI GLAPKAMEKC KNRS
101: RKNILSVNSE KGSKEEGEKS SISAAFVKVS MDGAPYLRKV DLKMYRSYQE LFMALQKMFI SFTGGNYGSQ GLSGRDFMNE SKVMDLLNGS EYVPTYEDKD
201: GDWMLVGDVP WEMFVDSCKR LRIMKGSEAI GLAPKAMEKC KNRS
001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
Arabidopsis Description
IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.