Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_14s0081g00010.t01 | Wine grape | nucleus, plastid | 59.24 | 82.94 |
| VIT_05s0020g04690.t01 | Wine grape | cytosol, nucleus, plastid | 71.43 | 69.96 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 68.49 | 66.8 |
| GSMUA_Achr10P... | Banana | nucleus | 67.23 | 66.39 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 65.13 | 63.79 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 65.55 | 62.9 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 63.03 | 62.24 |
| TraesCS5A01G058600.1 | Wheat | nucleus | 64.71 | 60.87 |
| TraesCS5B01G058500.1 | Wheat | nucleus | 64.29 | 60.71 |
| TraesCS5D01G069300.1 | Wheat | nucleus | 63.87 | 60.32 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 43.7 | 55.91 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 64.71 | 55.8 |
| EER90896 | Sorghum | nucleus | 54.62 | 55.32 |
| Zm00001d033976_P002 | Maize | nucleus | 55.04 | 55.27 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 58.4 | 54.94 |
| TraesCS5B01G381900.1 | Wheat | cytosol, mitochondrion, nucleus | 58.4 | 54.94 |
| Os03t0633500-01 | Rice | cytosol | 53.78 | 54.94 |
| Os03t0742900-01 | Rice | vacuole | 54.2 | 54.66 |
| EES17334 | Sorghum | cytosol | 64.29 | 54.45 |
| Os12t0601300-01 | Rice | nucleus | 63.03 | 54.15 |
| TraesCS5D01G392000.1 | Wheat | nucleus | 52.52 | 53.88 |
| TraesCS5A01G382600.1 | Wheat | nucleus | 52.52 | 53.65 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 37.82 | 53.57 |
| Zm00001d013302_P002 | Maize | nucleus | 51.26 | 53.51 |
| TraesCS5B01G386800.1 | Wheat | nucleus | 52.52 | 53.42 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 52.1 | 52.32 |
| OQU91311 | Sorghum | cytosol, mitochondrion, nucleus | 57.56 | 51.89 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 41.6 | 49.75 |
| VIT_11s0016g04490.t01 | Wine grape | cytosol, nucleus, plastid | 43.7 | 48.15 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 55.46 | 46.98 |
| VIT_09s0002g05150.t01 | Wine grape | cytosol, nucleus, plastid | 35.71 | 44.27 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 57.98 | 43.12 |
| Zm00001d041416_P001 | Maize | nucleus | 62.18 | 43.02 |
| TraesCS5D01G388300.2 | Wheat | cytosol | 56.72 | 42.86 |
| TraesCS5A01G378300.2 | Wheat | cytosol, mitochondrion, nucleus | 54.2 | 42.3 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 56.3 | 41.88 |
| VIT_09s0002g05160.t01 | Wine grape | nucleus | 45.8 | 37.07 |
| VIT_18s0001g08090.t01 | Wine grape | cytosol, nucleus, vacuole | 51.68 | 30.0 |
Protein Annotations
| EntrezGene:100259693 | wikigene:100259693 | Gene3D:3.10.20.90 | MapMan:35.1 | EMBL:AM451676 | InterPro:AUX/IAA_dom |
| InterPro:AUX_IAA | ProteinID:CAN63268 | ProteinID:CAN63268.1 | ProteinID:CCB44701 | ProteinID:CCB44701.1 | UniProt:F6GXL5 |
| EMBL:FN594965 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 |
| GO:GO:0009987 | InterPro:IPR000270 | EntrezGene:LOC100259693 | wikigene:LOC100259693 | InterPro:PB1_dom | PFAM:PF02309 |
| PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF28 | SUPFAM:SSF54277 | TIGR:TC56885 | TIGR:TC70800 |
| UniParc:UPI000210950F | ArrayExpress:VIT_07s0141g00290 | EnsemblPlantsGene:VIT_07s0141g00290 | EnsemblPlants:VIT_07s0141g00290.t01 | unigene:Vvi.963 | RefSeq:XP_002281771 |
| RefSeq:XP_002281771.1 | RefSeq:XP_002281796 | RefSeq:XP_002281796.1 | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F6GXL5]
Coordinates
chr7:+:180265..182899
Molecular Weight (calculated)
26309.6 Da
IEP (calculated)
8.299
GRAVY (calculated)
-0.602
Length
238 amino acids
Sequence
(BLAST)
(BLAST)
001: MATMHGEERE KPDLNLEATE LRLGLPGGSE GSEVVRKRGF SETVDLKLNL SGKEAGVDDN KVKSLQKEKS KSLLPCGNDP ARPPAKAQVV GWPPVRSFRK
101: NMLAGQKGGS EEGEKVSCNA AFVKVSMDGA PYLRKVDLKM YTSYQELSNA LGNMFSSFTI GNYGSQGMKD FMNESKLMDL LNGFDHVPTY EDKDGDWMLV
201: GDVPWEMFVD SCKRLRIMKG KEAIGLAPRA MEKCKNRS
101: NMLAGQKGGS EEGEKVSCNA AFVKVSMDGA PYLRKVDLKM YTSYQELSNA LGNMFSSFTI GNYGSQGMKD FMNESKLMDL LNGFDHVPTY EDKDGDWMLV
201: GDVPWEMFVD SCKRLRIMKG KEAIGLAPRA MEKCKNRS
001: MINFEATELR LGLPGGNHGG EMAGKNNGKR GFSETVDLKL NLSSTAMDSV SKVDLENMKE KVVKPPAKAQ VVGWPPVRSF RKNVMSGQKP TTGDATEGND
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
101: KTSGSSGATS SASACATVAY VKVSMDGAPY LRKIDLKLYK TYQDLSNALS KMFSSFTIGN YGPQGMKDFM NESKLIDLLN GSDYVPTYED KDGDWMLVGD
201: VPWEMFVDSC KRIRIMKGSE AIGLAPRALE KCKNRS
Arabidopsis Description
IAA16Auxin-responsive protein IAA16 [Source:UniProtKB/Swiss-Prot;Acc:O24407]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.