Factsheet for VIT_05s0020g04690.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01
VIT_02s0025g01740.t01
VIT_04s0008g05560.t01
VIT_05s0020g04680.t01
VIT_05s0020g04690.t01
VIT_06s0004g02750.t01
VIT_06s0004g03130.t01
VIT_07s0005g02550.t01
VIT_07s0104g01320.t01	nucleus, nucleus
VIT_09s0002g03410.t01
VIT_09s0002g05150.t01
VIT_11s0016g03540.t01
VIT_11s0052g00870.t01
VIT_14s0068g01330.t01
VIT_18s0001g13930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G04250.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT1G04250.1	VIT_18s0001g13930.t01	AT1G19850.1	22096563
AT1G04250.1	VIT_09s0002g03410.t01	AT1G51950.1	21734647
AT1G04250.1	VIT_06s0004g02750.t01	AT2G28350.1	21734647
AT1G04250.1	VIT_09s0002g05150.t01	AT3G15540.1	21734647
AT1G04250.1	VIT_09s0002g03410.t01	AT3G16500.1	21734647
AT1G04250.1	VIT_07s0104g01320.t01	AT3G62980.1	11713520
AT1G04250.1	VIT_07s0104g01320.t01	AT3G62980.1	22912871
AT1G04250.1	VIT_07s0104g01320.t01	AT3G62980.1	22912871
AT1G04250.1	VIT_05s0020g04680.t01	AT4G14560.1	9342315
AT1G04250.1	VIT_02s0025g01740.t01	AT4G23980.1	21734647
AT1G04250.1	VIT_04s0008g05560.t01	AT4G32280.1	21734647
AT1G04250.1	VIT_05s0020g04680.t01	AT5G43700.1	21734647
AT1G04250.1	VIT_06s0004g03130.t01	AT5G60450.1	21734647
AT3G23050.1	VIT_05s0020g04690.t01	AT1G04250.1	21734647
AT3G23050.1	VIT_14s0068g01330.t01	AT1G12820.1	15992545
AT3G23050.1	VIT_09s0002g03410.t01	AT1G51950.1	21734647
AT3G23050.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166
AT3G23050.1	VIT_07s0005g02550.t01	AT2G46990.1	21734647
AT3G23050.1	VIT_14s0068g01330.t01	AT3G26810.1	15992545
AT3G23050.1	VIT_07s0104g01320.t01	AT3G62980.1	11713520
AT3G23050.1	VIT_07s0104g01320.t01	AT3G62980.1	22912871
AT3G23050.1	VIT_07s0104g01320.t01	AT3G62980.1	22912871
AT3G23050.1	VIT_11s0016g03540.t01	AT4G29080.1	21734647
AT3G23050.1	VIT_11s0052g00870.t01	AT5G57420.1	21734647
AT3G23050.1	VIT_06s0004g03130.t01	AT5G60450.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0081g00010.t01	Wine grape	nucleus, plastid	57.61	82.35
KRH34377	Soybean	nucleus	77.78	79.08
Solyc09g083290.2.1	Tomato	nucleus	74.9	77.12
PGSC0003DMT400015610	Potato	nucleus	74.49	76.05
CDY10694	Canola	mitochondrion	53.5	74.71
Bra033886.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	73.25	73.55
Bra001900.1-P	Field mustard	cytosol, nucleus, plastid	71.19	73.0
CDX92973	Canola	cytosol, nucleus, plastid	71.19	73.0
CDY62130	Canola	cytosol, nucleus, plastid	69.14	72.1
Bra039855.1-P	Field mustard	nucleus	69.14	72.1
AT3G23050.1	Thale cress	cytosol, nucleus, plastid	72.02	72.02
CDY47148	Canola	nucleus	68.72	71.67
VIT_07s0141g00290.t01	Wine grape	cytosol, nucleus, plastid	69.96	71.43
CDY10349	Canola	endoplasmic reticulum, extracellular	72.02	71.14
CDY30781	Canola	cytosol, nucleus, plastid	69.55	70.42
CDY63910	Canola	cytosol, nucleus, plastid	69.55	70.42
GSMUA_Achr8P20610_001	Banana	nucleus	69.55	69.26
AT4G14550.2	Thale cress	nucleus	66.67	69.23
AT1G04250.1	Thale cress	cytosol, nucleus, plastid	65.02	69.0
CDY32537	Canola	nucleus	64.61	68.86
Bra032520.1-P	Field mustard	nucleus	64.2	68.72
CDY10068	Canola	cytosol, nucleus, plastid	64.2	68.42
CDX89832	Canola	nucleus	62.96	68.3
CDY15493	Canola	cytosol, nucleus, plastid	64.2	68.12
Bra030560.1-P	Field mustard	nucleus	64.2	68.12
GSMUA_Achr10P...	Banana	nucleus	67.49	68.05
Bra015298.1-P	Field mustard	nucleus	62.55	67.86
CDY18214	Canola	nucleus	62.55	67.86
GSMUA_Achr4P21020_001	Banana	nucleus	67.9	66.53
GSMUA_Achr9P25550_001	Banana	nucleus	66.26	66.26
GSMUA_Achr9P10700_001	Banana	nucleus	65.02	65.56
TraesCS5A01G058600.1	Wheat	nucleus	65.84	63.24
TraesCS5D01G069300.1	Wheat	nucleus	65.43	63.1
TraesCS5B01G058500.1	Wheat	nucleus	65.43	63.1
KRG92429	Soybean	cytosol, nucleus, plastid	79.84	58.61
HORVU5Hr1G014300.4	Barley	nucleus	65.84	57.97
GSMUA_Achr4P22520_001	Banana	nucleus	60.08	57.71
EES17334	Sorghum	cytosol	66.67	57.65
Os03t0633500-01	Rice	cytosol	54.73	57.08
Os03t0742900-01	Rice	vacuole	55.14	56.78
Os12t0601300-01	Rice	nucleus	63.37	55.6
TraesCS5B01G381900.1	Wheat	cytosol, mitochondrion, nucleus	57.61	55.34
EER90896	Sorghum	nucleus	53.5	55.32
Zm00001d033976_P002	Maize	nucleus	53.91	55.27
TraesCS5D01G392000.1	Wheat	nucleus	52.26	54.74
TraesCS5A01G382600.1	Wheat	nucleus	52.26	54.51
Zm00001d013302_P002	Maize	nucleus	51.03	54.39
TraesCS5B01G386800.1	Wheat	nucleus	52.26	54.27
HORVU5Hr1G094220.1	Barley	nucleus	52.67	54.01
VIT_07s0141g00270.t01	Wine grape	nucleus	41.15	53.76
OQU91311	Sorghum	cytosol, mitochondrion, nucleus	58.02	53.41
VIT_05s0020g04680.t01	Wine grape	nucleus	36.21	52.38
VIT_14s0030g02310.t01	Wine grape	nucleus	41.15	50.25
VIT_11s0016g04490.t01	Wine grape	cytosol, nucleus, plastid	42.8	48.15
HORVU5Hr1G093580.2	Barley	cytosol, nucleus, peroxisome	54.73	47.33
VIT_09s0002g04080.t01	Wine grape	nucleus	58.44	44.38
VIT_11s0016g03540.t01	Wine grape	nucleus	58.44	44.38
VIT_09s0002g05150.t01	Wine grape	cytosol, nucleus, plastid	34.98	44.27
Zm00001d041416_P001	Maize	nucleus	62.14	43.9
TraesCS5D01G388300.2	Wheat	cytosol	56.38	43.49
TraesCS5A01G378300.2	Wheat	cytosol, mitochondrion, nucleus	53.5	42.62
CDY63072	Canola	nucleus	65.02	39.7
VIT_09s0002g05160.t01	Wine grape	nucleus	45.68	37.76
VIT_18s0001g08090.t01	Wine grape	cytosol, nucleus, vacuole	51.03	30.24

Protein Annotations

EntrezGene:100254530	wikigene:100254530	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
ProteinID:CCB50496	ProteinID:CCB50496.1	UniProt:F6HDY1	EMBL:FN595749	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EntrezGene:LOC100254530
wikigene:LOC100254530	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF84
SUPFAM:SSF54277	TIGR:TC54531	UniParc:UPI00019833A5	ArrayExpress:VIT_05s0020g04690	EnsemblPlantsGene:VIT_05s0020g04690	EnsemblPlants:VIT_05s0020g04690.t01
unigene:Vvi.1351	RefSeq:XP_002284133	RefSeq:XP_002284133.1	RefSeq:XP_002284143	RefSeq:XP_002284143.1	SEG:seg

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F6HDY1]

Coordinates

chr5:+:6548370..6550556

Molecular Weight (calculated)

26803.4 Da

IEP (calculated)

8.009

GRAVY (calculated)

-0.494

Length

243 amino acids

Sequence
(BLAST)

001: MEVGRKMSSM LGAERGFDFK ETELCLGLPG GGGGEAETLK ASGKRGFSET VDLKLNLQSK ESVVDLNENV KCPPKEKNLL PCTKDPAKPP AKAQVVGWPP
101: VRSFRKNIMA QKNSSEEGEK GSSGAAFVKV CMDGAPYLRK VDLKMYKSYQ ELSDALGKMF SSFTMGNYGA QGMIDFMNES KLMDLLNSSE YVPTYEDKDG
201: DWMLVGDVPW EMFVDSCKRL RIMKGSEAIG LAPRAMEKCK NRC

Best Arabidopsis Sequence Match ( AT4G14550.1 )
(BLAST)

001: MNLKETELCL GLPGGTETVE SPAKSGVGNK RGFSETVDLK LNLQSNKQGH VDLNTNGAPK EKTFLKDPSK PPAKAQVVGW PPVRNYRKNV MANQKSGEAE
101: EAMSSGGGTV AFVKVSMDGA PYLRKVDLKM YTSYKDLSDA LAKMFSSFTM GSYGAQGMID FMNESKVMDL LNSSEYVPSY EDKDGDWMLV GDVPWPMFVE
201: SCKRLRIMKG SEAIGLAPRA MEKFKNRS

Arabidopsis Description

IAA14indole-3-acetic acid inducible 14 [Source:TAIR;Acc:AT4G14550]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.