Factsheet for VIT_11s0052g00870.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g04070.t01
VIT_02s0025g01740.t01
VIT_06s0004g02750.t01
VIT_07s0005g02550.t01
VIT_11s0016g03540.t01
VIT_13s0019g04380.t01
VIT_18s0001g13930.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57420.1	VIT_01s0011g04070.t01	AT1G15050.1	21734647
AT5G57420.1	VIT_18s0001g13930.t01	AT1G19850.1	21734647
AT5G57420.1	VIT_02s0025g01740.t01	AT1G35240.1	21734647
AT5G57420.1	VIT_06s0004g02750.t01	AT2G28350.1	21734647
AT5G57420.1	VIT_07s0005g02550.t01	AT3G62100.1	21734647
AT5G57420.1	VIT_11s0016g03540.t01	AT4G29080.1	21734647
AT5G57420.1	VIT_13s0019g04380.t01	AT4G30080.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G112440.1	Barley	cytosol, nucleus	27.38	64.79
KRH33583	Soybean	cytosol, nucleus	35.71	56.6
Bra002729.1-P	Field mustard	nucleus	52.98	55.62
AT5G57420.1	Thale cress	nucleus, plastid	55.36	54.39
GSMUA_Achr6P03870_001	Banana	cytosol	39.88	51.94
GSMUA_Achr10P...	Banana	nucleus	52.38	51.76
Solyc07g019450.2.1	Tomato	nucleus, plastid	45.24	51.7
CDY47946	Canola	nucleus	52.98	50.86
CDY61501	Canola	nucleus, plastid	52.98	50.86
GSMUA_Achr7P16390_001	Banana	nucleus	52.98	50.86
PGSC0003DMT400093571	Potato	nucleus	34.52	50.0
TraesCS2B01G534500.1	Wheat	nucleus, plastid	47.02	47.88
Os04t0653300-00	Rice	nucleus	47.62	47.34
TraesCS2A01G506100.1	Wheat	nucleus, plastid	46.43	46.71
TraesCS2D01G506900.1	Wheat	nucleus, plastid	45.83	46.39
EES11567	Sorghum	cytosol, plastid	45.83	46.11
Zm00001d026480_P001	Maize	nucleus	43.45	43.2
CDY25909	Canola	nucleus, plastid	43.45	41.95
KRG90334	Soybean	cytosol, plastid	33.93	40.71
CDY38297	Canola	nucleus, plastid	43.45	40.56

Protein Annotations

EntrezGene:100244496	wikigene:100244496	Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA
ProteinID:CBI17839	ProteinID:CBI17839.3	UniProt:D7SQA8	EMBL:FN594964	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EntrezGene:LOC100244496
wikigene:LOC100244496	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF7
SUPFAM:SSF54277	UniParc:UPI00015CC2E8	ArrayExpress:VIT_11s0052g00870	EnsemblPlantsGene:VIT_11s0052g00870	EnsemblPlants:VIT_11s0052g00870.t01	RefSeq:XP_002268816
RefSeq:XP_002268816.1	SEG:seg	:	:	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:D7SQA8]

Coordinates

chr11:-:18451732..18452628

Molecular Weight (calculated)

18435.7 Da

IEP (calculated)

9.685

GRAVY (calculated)

-0.405

Length

168 amino acids

Sequence
(BLAST)

001: MNTFRFQHQT QDSFDSRRWS QNHRPSSAGF YARRAAAPPQ PSSSSIQTFP GLADDDLVAA VVPPVTVVLE GRSICHRISL HSHASYQSLA RALRQMFVDG
101: SSADVGAAGG DHELDLSNAV PGHLIAYEDM ENDLLLAGDL NWKDFVRVAK RIRILPAKRN SRKGRGGV

Best Arabidopsis Sequence Match ( AT5G57420.1 )
(BLAST)

001: MNSFEPQSQD SLQRRFHQDN STTQQPRDTT TPFIPKPASK NHNNSNSSSG AAGRSFQGFG LNVEDDLVSS VVPPVTVVLE GRSICQRISL DKHGSYQSLA
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E

Arabidopsis Description

IAA33Auxin-responsive protein IAA33 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.