Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G534500.1 | Wheat | nucleus, plastid | 92.96 | 40.0 |
| TraesCS2A01G506100.1 | Wheat | nucleus, plastid | 92.96 | 39.52 |
| TraesCS2D01G506900.1 | Wheat | nucleus, plastid | 90.14 | 38.55 |
| Zm00001d026480_P001 | Maize | nucleus | 74.65 | 31.36 |
| EES11567 | Sorghum | cytosol, plastid | 73.24 | 31.14 |
| GSMUA_Achr7P16390_001 | Banana | nucleus | 73.24 | 29.71 |
| Os04t0653300-00 | Rice | nucleus | 69.01 | 28.99 |
| GSMUA_Achr10P... | Banana | nucleus | 67.61 | 28.24 |
| Bra002729.1-P | Field mustard | nucleus | 63.38 | 28.12 |
| VIT_11s0052g00870.t01 | Wine grape | nucleus | 64.79 | 27.38 |
| AT5G57420.1 | Thale cress | nucleus, plastid | 64.79 | 26.9 |
| Solyc07g019450.2.1 | Tomato | nucleus, plastid | 54.93 | 26.53 |
| CDY61501 | Canola | nucleus, plastid | 63.38 | 25.71 |
| CDY47946 | Canola | nucleus | 63.38 | 25.71 |
| KRH33583 | Soybean | cytosol, nucleus | 33.8 | 22.64 |
| PGSC0003DMT400093571 | Potato | nucleus | 36.62 | 22.41 |
| GSMUA_Achr6P03870_001 | Banana | cytosol | 39.44 | 21.71 |
| CDY25909 | Canola | nucleus, plastid | 46.48 | 18.97 |
| CDY38297 | Canola | nucleus, plastid | 46.48 | 18.33 |
| KRG90334 | Soybean | cytosol, plastid | 33.8 | 17.14 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A287JGV5 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU2Hr1G112440 | EnsemblPlants:HORVU2Hr1G112440.1 | PFAM:PF02309 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF7 | UniParc:UPI000B473BF7 | SEG:seg | : | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287JGV5]
Coordinates
chrchr2H:+:725794415..725794961
Molecular Weight (calculated)
7716.0 Da
IEP (calculated)
4.380
GRAVY (calculated)
-0.355
Length
71 amino acids
Sequence
(BLAST)
(BLAST)
1: FVDDAAEGDE DGLDLSNAVP GHVVAYEDME DDLLLAGDLN WKDFVRVAKR IRIIPAKSST RRIKQCGGGA N
001: MNSFEPQSQD SLQRRFHQDN STTQQPRDTT TPFIPKPASK NHNNSNSSSG AAGRSFQGFG LNVEDDLVSS VVPPVTVVLE GRSICQRISL DKHGSYQSLA
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
Arabidopsis Description
IAA33Auxin-responsive protein IAA33 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.