Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G534500.1 | Wheat | nucleus, plastid | 96.39 | 96.97 |
| TraesCS2A01G506100.1 | Wheat | nucleus, plastid | 95.18 | 94.61 |
| HORVU2Hr1G112440.1 | Barley | cytosol, nucleus | 38.55 | 90.14 |
| EES11567 | Sorghum | cytosol, plastid | 65.66 | 65.27 |
| Zm00001d026480_P001 | Maize | nucleus | 58.43 | 57.4 |
| Os04t0653300-00 | Rice | nucleus | 55.42 | 54.44 |
| GSMUA_Achr10P... | Banana | nucleus | 50.6 | 49.41 |
| GSMUA_Achr7P16390_001 | Banana | nucleus | 50.6 | 48.0 |
| Bra002729.1-P | Field mustard | nucleus | 45.78 | 47.5 |
| AT5G57420.1 | Thale cress | nucleus, plastid | 47.59 | 46.2 |
| VIT_11s0052g00870.t01 | Wine grape | nucleus | 46.39 | 45.83 |
| GSMUA_Achr6P03870_001 | Banana | cytosol | 35.54 | 45.74 |
| CDY61501 | Canola | nucleus, plastid | 46.99 | 44.57 |
| CDY47946 | Canola | nucleus | 46.99 | 44.57 |
| KRH33583 | Soybean | cytosol, nucleus | 28.31 | 44.34 |
| Solyc07g019450.2.1 | Tomato | nucleus, plastid | 35.54 | 40.14 |
| PGSC0003DMT400093571 | Potato | nucleus | 27.11 | 38.79 |
| CDY25909 | Canola | nucleus, plastid | 38.55 | 36.78 |
| CDY38297 | Canola | nucleus, plastid | 39.16 | 36.11 |
| KRG90334 | Soybean | cytosol, plastid | 26.51 | 31.43 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR000270 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF7 | EnsemblPlantsGene:TraesCS2D01G506900 |
| EnsemblPlants:TraesCS2D01G506900.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2D:-:600434163..600434760
Molecular Weight (calculated)
17697.9 Da
IEP (calculated)
7.987
GRAVY (calculated)
-0.422
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSGGGSGSG SGAGPSSSSF ERHAKRRPPA TPASDQQRKL LRLSTQHGQG EEDALAAGVV PPVTVVLDGR CICHRIQLSR HTGYRSLAGA LRRMFVDDAA
101: EGDDDDGLDL SNAVPGHVVA YEDMEDDLLL AGDLSWKDFC RVAKRIRIIP AKSTTRRIKQ CGGAVN
101: EGDDDDGLDL SNAVPGHVVA YEDMEDDLLL AGDLSWKDFC RVAKRIRIIP AKSTTRRIKQ CGGAVN
001: MNSFEPQSQD SLQRRFHQDN STTQQPRDTT TPFIPKPASK NHNNSNSSSG AAGRSFQGFG LNVEDDLVSS VVPPVTVVLE GRSICQRISL DKHGSYQSLA
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
Arabidopsis Description
IAA33Auxin-responsive protein IAA33 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.