Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P16390_001 | Banana | nucleus | 66.67 | 49.14 |
| GSMUA_Achr10P... | Banana | nucleus | 64.34 | 48.82 |
| PGSC0003DMT400093571 | Potato | nucleus | 39.53 | 43.97 |
| VIT_11s0052g00870.t01 | Wine grape | nucleus | 51.94 | 39.88 |
| HORVU2Hr1G112440.1 | Barley | cytosol, nucleus | 21.71 | 39.44 |
| Os04t0653300-00 | Rice | nucleus | 48.84 | 37.28 |
| CDY47946 | Canola | nucleus | 50.39 | 37.14 |
| KRH33583 | Soybean | cytosol, nucleus | 30.23 | 36.79 |
| CDY61501 | Canola | nucleus, plastid | 49.61 | 36.57 |
| EES11567 | Sorghum | cytosol, plastid | 47.29 | 36.53 |
| AT5G57420.1 | Thale cress | nucleus, plastid | 48.06 | 36.26 |
| TraesCS2B01G534500.1 | Wheat | nucleus, plastid | 45.74 | 35.76 |
| TraesCS2D01G506900.1 | Wheat | nucleus, plastid | 45.74 | 35.54 |
| Bra002729.1-P | Field mustard | nucleus | 43.41 | 35.0 |
| TraesCS2A01G506100.1 | Wheat | nucleus, plastid | 44.96 | 34.73 |
| Solyc07g019450.2.1 | Tomato | nucleus, plastid | 38.76 | 34.01 |
| Zm00001d026480_P001 | Maize | nucleus | 43.41 | 33.14 |
| CDY25909 | Canola | nucleus, plastid | 43.41 | 32.18 |
| CDY38297 | Canola | nucleus, plastid | 43.41 | 31.11 |
| KRG90334 | Soybean | cytosol, plastid | 27.91 | 25.71 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr6G03870_001 | EnsemblPlants:GSMUA_Achr6P03870_001 |
| EnsemblPlants:GSMUA_Achr6T03870_001 | InterPro:IPR000270 | UniProt:M0T3Y5 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF7 | UniParc:UPI000294C921 | SEG:seg | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G03870_001]
Coordinates
chr6:-:2664145..2664534
Molecular Weight (calculated)
14196.8 Da
IEP (calculated)
5.198
GRAVY (calculated)
-0.343
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNGFELHHE APKRRCGTGA AAQPSRAPTG KNNLTLSSLD DDVASAVVPR VTVFLEGRSI CHLIRLDKHT SYASLAKALR RMFVDVDEGD GRREDGDEVL
101: HLSDAMPGHI VAYEDMEDDL LLVGDLNWK
101: HLSDAMPGHI VAYEDMEDDL LLVGDLNWK
001: MNSFEPQSQD SLQRRFHQDN STTQQPRDTT TPFIPKPASK NHNNSNSSSG AAGRSFQGFG LNVEDDLVSS VVPPVTVVLE GRSICQRISL DKHGSYQSLA
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E
Arabidopsis Description
IAA33Auxin-responsive protein IAA33 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.