Factsheet for Solyc07g019450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g081240.2.1
Solyc05g008850.2.1
Solyc06g075150.2.1
Solyc08g008380.2.1
Solyc08g082630.2.1
Solyc11g069500.1.1
Solyc12g007230.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57420.1	Solyc05g008850.2.1	AT1G15050.1	21734647
AT5G57420.1	Solyc04g081240.2.1	AT1G19850.1	21734647
AT5G57420.1	Solyc08g008380.2.1	AT1G35240.1	21734647
AT5G57420.1	Solyc08g082630.2.1	AT1G35240.1	21734647
AT5G57420.1	Solyc06g075150.2.1	AT2G28350.1	21734647
AT5G57420.1	Solyc11g069500.1.1	AT2G28350.1	21734647
AT5G57420.1	Solyc12g007230.1.1	AT4G29080.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400093571	Potato	nucleus	67.35	85.34
HORVU2Hr1G112440.1	Barley	cytosol, nucleus	26.53	54.93
Bra002729.1-P	Field mustard	nucleus	50.34	46.25
AT5G57420.1	Thale cress	nucleus, plastid	53.06	45.61
VIT_11s0052g00870.t01	Wine grape	nucleus	51.7	45.24
KRH33583	Soybean	cytosol, nucleus	31.97	44.34
CDY61501	Canola	nucleus, plastid	51.7	43.43
CDY47946	Canola	nucleus	51.02	42.86
Os04t0653300-00	Rice	nucleus	46.26	40.24
GSMUA_Achr6P03870_001	Banana	cytosol	34.01	38.76
Zm00001d026480_P001	Maize	nucleus	42.18	36.69
GSMUA_Achr10P...	Banana	nucleus	42.18	36.47
TraesCS2D01G506900.1	Wheat	nucleus, plastid	40.14	35.54
EES11567	Sorghum	cytosol, plastid	40.14	35.33
TraesCS2B01G534500.1	Wheat	nucleus, plastid	39.46	35.15
GSMUA_Achr7P16390_001	Banana	nucleus	41.5	34.86
CDY25909	Canola	nucleus, plastid	40.82	34.48
TraesCS2A01G506100.1	Wheat	nucleus, plastid	38.78	34.13
CDY38297	Canola	nucleus, plastid	40.82	33.33
KRG90334	Soybean	cytosol, plastid	27.21	28.57

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:G9HPX4	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EMBL:JN379453	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF7
SUPFAM:SSF54277	EnsemblPlantsGene:Solyc07g019450.2	EnsemblPlants:Solyc07g019450.2.1	UniParc:UPI000243DC11	SEG:seg	:

Description

Auxin-responsive protein IAA33 [Source:Projected from Arabidopsis thaliana (AT5G57420) UniProtKB/Swiss-Prot;Acc:Q9FKM7]

Coordinates

chr7:+:11422977..11424468

Molecular Weight (calculated)

16406.5 Da

IEP (calculated)

7.290

GRAVY (calculated)

-0.396

Length

147 amino acids

Sequence
(BLAST)

001: MSSFESQTRQ ECLNKRITTK YYDMMSSRSS SSSCNDPPAV TVVIEGRSIC QMISLHKLGS YQSLAKTLNQ MFVDSGDIIE CSSQNNNNNN VDLSNALPGH
101: LIAYEDIEND LLLVGDLSWK DFVKVAKRIR ILPAKPNSRT GRVESNI

Best Arabidopsis Sequence Match ( AT5G57420.1 )
(BLAST)

001: MNSFEPQSQD SLQRRFHQDN STTQQPRDTT TPFIPKPASK NHNNSNSSSG AAGRSFQGFG LNVEDDLVSS VVPPVTVVLE GRSICQRISL DKHGSYQSLA
101: SALRQMFVDG ADSTDDLDLS NAIPGHLIAY EDMENDLLLA GDLTWKDFVR VAKRIRILPV KGNTRQVKRN E

Arabidopsis Description

IAA33Auxin-responsive protein IAA33 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKM7]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.