Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G331100.1 | Wheat | nucleus | 90.22 | 69.17 |
| TraesCS7D01G339300.1 | Wheat | nucleus | 88.59 | 67.92 |
| TraesCS7B01G242800.1 | Wheat | nucleus | 89.13 | 67.21 |
| EER89802 | Sorghum | cytosol | 72.28 | 53.41 |
| Os06t0335500-01 | Rice | nucleus | 76.63 | 53.01 |
| HORVU3Hr1G031460.1 | Barley | cytosol | 53.26 | 42.61 |
| GSMUA_Achr10P... | Banana | nucleus | 56.52 | 37.41 |
| GSMUA_Achr9P06290_001 | Banana | nucleus | 54.89 | 36.86 |
| KRH74730 | Soybean | plastid | 30.98 | 35.4 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 50.54 | 34.83 |
| GSMUA_Achr6P26730_001 | Banana | nucleus | 52.72 | 34.77 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 45.65 | 33.87 |
| HORVU3Hr1G062160.2 | Barley | nucleus, plastid | 45.11 | 31.92 |
| Bra011082.1-P | Field mustard | nucleus | 50.0 | 31.72 |
| CDY06836 | Canola | nucleus | 42.93 | 31.35 |
| KRH23426 | Soybean | nucleus | 52.17 | 31.27 |
| Solyc03g120500.2.1 | Tomato | nucleus | 46.74 | 30.94 |
| AT4G29080.1 | Thale cress | nucleus | 51.09 | 30.82 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 53.26 | 30.62 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 39.13 | 30.38 |
| KRH60250 | Soybean | nucleus | 47.28 | 30.31 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 52.72 | 30.31 |
| PGSC0003DMT400006548 | Potato | plastid | 42.93 | 30.27 |
| KRH39325 | Soybean | nucleus | 49.46 | 29.64 |
| Solyc12g007230.1.1 | Tomato | nucleus | 47.28 | 29.49 |
| KRH09902 | Soybean | nucleus | 51.09 | 29.47 |
| PGSC0003DMT400001013 | Potato | nucleus | 44.57 | 29.39 |
| KRH47242 | Soybean | nucleus | 49.46 | 28.53 |
| KRH44313 | Soybean | nucleus | 49.46 | 28.26 |
| HORVU1Hr1G086070.6 | Barley | plastid | 47.83 | 28.11 |
| HORVU1Hr1G025670.3 | Barley | nucleus | 29.89 | 27.5 |
| HORVU3Hr1G088810.1 | Barley | plastid | 34.24 | 26.58 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 38.04 | 25.36 |
| HORVU5Hr1G106350.2 | Barley | plastid | 30.43 | 24.89 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 34.24 | 24.61 |
| HORVU3Hr1G022540.7 | Barley | cytosol, nucleus | 28.8 | 24.54 |
| KRH41538 | Soybean | golgi, plasma membrane | 47.28 | 24.37 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 33.7 | 22.06 |
| HORVU7Hr1G084940.3 | Barley | plastid | 22.28 | 21.81 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 33.7 | 19.75 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A287E6P7 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU0Hr1G021630 |
| EnsemblPlants:HORVU0Hr1G021630.1 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF83 | SUPFAM:SSF54277 | UniParc:UPI000B463C41 | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287E6P7]
Coordinates
chrchrUn:-:113015875..113017479
Molecular Weight (calculated)
19337.3 Da
IEP (calculated)
9.539
GRAVY (calculated)
-0.226
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPTQERDYI GLSPAAAAAA TELRLGLPGT EDAAGDGGGA ASGAPLTLEL LSKGGAKRGF AGAVAEEEDE KKKAQPPAAK AQVVGWPPIR SYRKNTMATN
101: FSAPRSKDEA EAKQAPAPGC LYVKVSMDGA PYLRKVDLKM YKNYKDLSLE LEKKFSGFTV GSLVLVLTVA SSVRKEQLPA IVLV
101: FSAPRSKDEA EAKQAPAPGC LYVKVSMDGA PYLRKVDLKM YKNYKDLSLE LEKKFSGFTV GSLVLVLTVA SSVRKEQLPA IVLV
001: MSVSVAAEHD YIGLSEFPTM EATTMSDKTK TRDNNNGLNF KATELRLGLP GSESPERVDS RFLALNKSSC PVSGAKRVFS DAINDSNKWV FSPGSTTATG
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN
101: DVGSGSGPRT SVVKDGKSTT FTKPAVPVKE KKSSATAPAS KAQVVGWPPI RSFRKNSMAS SQSQKPGNNS ETEEAEAKSG PEQPCLYVKV SMEGAPYLRK
201: IDLKTYKSYL ELSSALEKMF SCFTIGQFGS HGGCGRDGLN ESRLTDLLRG SEYVVTYEDK DSDWMLVGDV PWEMFICSCK KLRIMKSSEA IGLAPRVMEK
301: CRSRN
Arabidopsis Description
IAA27Auxin-responsive protein IAA27 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZSY8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.