Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G388200.1 | Wheat | nucleus | 63.69 | 93.02 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 61.78 | 91.51 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 60.83 | 90.09 |
| Os03t0633800-01 | Rice | nucleus | 48.73 | 67.7 |
| Zm00001d033319_P001 | Maize | nucleus | 43.63 | 60.62 |
| EER93778 | Sorghum | cytosol, nucleus, plastid | 43.63 | 60.62 |
| KRH34375 | Soybean | cytosol, nucleus | 22.93 | 59.02 |
| Zm00001d013707_P001 | Maize | nucleus | 41.08 | 57.59 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 31.21 | 57.31 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 22.61 | 56.8 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 27.71 | 55.77 |
| PGSC0003DMT400051896 | Potato | plastid | 27.07 | 55.56 |
| GSMUA_Achr11P... | Banana | nucleus | 29.62 | 53.45 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 32.17 | 53.16 |
| Solyc06g053840.2.1 | Tomato | nucleus | 32.17 | 53.16 |
| AT4G14560.1 | Thale cress | nucleus | 28.34 | 52.98 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 33.12 | 52.26 |
| PGSC0003DMT400049677 | Potato | nucleus | 30.25 | 51.91 |
| CDY36883 | Canola | nucleus | 28.34 | 51.74 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 42.04 | 51.56 |
| CDX94876 | Canola | nucleus | 28.03 | 51.46 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 30.25 | 51.08 |
| KRH71338 | Soybean | nucleus | 32.8 | 50.99 |
| CDX92972 | Canola | nucleus | 27.71 | 50.88 |
| Bra001899.1-P | Field mustard | nucleus | 27.71 | 50.88 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 27.07 | 50.6 |
| Solyc09g065850.2.1 | Tomato | nucleus | 29.62 | 50.27 |
| PGSC0003DMT400015655 | Potato | nucleus | 31.21 | 50.26 |
| CDY53735 | Canola | nucleus | 27.39 | 50.0 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 29.62 | 50.0 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 29.62 | 50.0 |
| Bra033890.1-P | Field mustard | nucleus | 27.39 | 50.0 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 28.66 | 50.0 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 29.62 | 50.0 |
| CDY10692 | Canola | nucleus | 27.39 | 50.0 |
| Solyc09g083280.2.1 | Tomato | nucleus | 31.21 | 50.0 |
| CDY35493 | Canola | nucleus | 27.07 | 49.71 |
| Bra023771.1-P | Field mustard | nucleus | 27.07 | 49.71 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 29.3 | 49.46 |
| CDY10069 | Canola | nucleus | 28.98 | 49.46 |
| Bra032521.1-P | Field mustard | nucleus | 28.34 | 49.44 |
| CDY10346 | Canola | nucleus | 27.07 | 49.42 |
| Solyc04g054280.1.1 | Tomato | nucleus | 26.11 | 49.4 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 25.8 | 49.39 |
| CDY40837 | Canola | nucleus | 26.75 | 49.12 |
| Bra039732.1-P | Field mustard | nucleus | 26.75 | 49.12 |
| KRH69048 | Soybean | nucleus | 29.94 | 48.96 |
| KRH32098 | Soybean | nucleus | 26.75 | 48.28 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 29.3 | 48.17 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 29.3 | 48.17 |
| PGSC0003DMT400013662 | Potato | cytosol | 28.98 | 47.89 |
| KRG92430 | Soybean | nucleus | 29.3 | 47.42 |
| Bra027504.1-P | Field mustard | nucleus | 28.66 | 47.12 |
| Solyc06g008580.2.1 | Tomato | nucleus | 28.34 | 46.84 |
| KRG95613 | Soybean | nucleus | 30.25 | 46.57 |
| KRH67288 | Soybean | nucleus | 30.25 | 46.12 |
| HORVU5Hr1G106350.2 | Barley | plastid | 30.89 | 43.11 |
| HORVU5Hr1G094220.1 | Barley | nucleus | 28.03 | 37.13 |
| HORVU3Hr1G031460.1 | Barley | cytosol | 26.43 | 36.09 |
| HORVU1Hr1G025670.3 | Barley | nucleus | 22.61 | 35.5 |
| AT3G23030.2 | Thale cress | vacuole | 28.34 | 34.1 |
| HORVU0Hr1G021630.1 | Barley | cytosol, mitochondrion, nucleus | 19.75 | 33.7 |
| HORVU7Hr1G084940.3 | Barley | plastid | 19.75 | 32.98 |
| HORVU5Hr1G014300.4 | Barley | nucleus | 28.98 | 32.97 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 30.25 | 32.87 |
| HORVU3Hr1G062160.2 | Barley | nucleus, plastid | 25.8 | 31.15 |
| HORVU5Hr1G093580.2 | Barley | cytosol, nucleus, peroxisome | 27.07 | 30.25 |
| HORVU3Hr1G022540.7 | Barley | cytosol, nucleus | 20.06 | 29.17 |
| HORVU1Hr1G086070.6 | Barley | plastid | 28.98 | 29.07 |
| HORVU3Hr1G088810.1 | Barley | plastid | 21.34 | 28.27 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A287SAG1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:HORVU5Hr1G093640 |
| EnsemblPlants:HORVU5Hr1G093640.1 | InterPro:IPR000270 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF25 | SUPFAM:SSF54277 | UniParc:UPI000B466932 | SEG:seg | : | : |
Description
Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A287SAG1]
Coordinates
chrchr5H:+:592408069..592409479
Molecular Weight (calculated)
34349.9 Da
IEP (calculated)
9.954
GRAVY (calculated)
-0.481
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: GVCLLRSMHS THLRVARLCH CQPMRWLYAN LLAMPFASLR QSPPIKHGRQ PCHCQANTSN HTSSSQRARA IRSRSHRIQT YVLLKFFSSA ASSFARRLEM
101: EATDNLLMAT ELRLGLPGTD DKPQRINYVS PPATPRGKKR TLDAFEATAS DEDDKSDDVQ TAPPVAKAQV VGWPPVRSYR KSCFQAAASK SKAKKADETS
201: SNNAPSAAAP ASTNGSFVKV SMDGAPYLRK IDMRMYKGYR ELREALEAMF VCFSGADAGA SNGGGANPSE YAITYEDKDG DLMLVGDVPF DMFSGTCKKL
301: RIIKRSEATG LGSK
101: EATDNLLMAT ELRLGLPGTD DKPQRINYVS PPATPRGKKR TLDAFEATAS DEDDKSDDVQ TAPPVAKAQV VGWPPVRSYR KSCFQAAASK SKAKKADETS
201: SNNAPSAAAP ASTNGSFVKV SMDGAPYLRK IDMRMYKGYR ELREALEAMF VCFSGADAGA SNGGGANPSE YAITYEDKDG DLMLVGDVPF DMFSGTCKKL
301: RIIKRSEATG LGSK
001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.