Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER93778 | Sorghum | cytosol, nucleus, plastid | 80.53 | 80.53 |
| Zm00001d013707_P001 | Maize | nucleus | 78.32 | 79.02 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 61.06 | 64.19 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 58.41 | 62.26 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 58.41 | 62.26 |
| Os03t0633800-01 | Rice | nucleus | 61.06 | 61.06 |
| Zm00001d041418_P001 | Maize | nucleus | 57.96 | 56.96 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 31.42 | 56.8 |
| KRH34375 | Soybean | cytosol, nucleus | 30.53 | 56.56 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 40.27 | 53.22 |
| Zm00001d018973_P001 | Maize | nucleus | 47.35 | 52.97 |
| PGSC0003DMT400051896 | Potato | plastid | 35.84 | 52.94 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 35.84 | 51.92 |
| Zm00001d030993_P001 | Maize | nucleus | 45.13 | 51.26 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 45.13 | 51.26 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 42.04 | 51.08 |
| GSMUA_Achr11P... | Banana | nucleus | 38.94 | 50.57 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 42.04 | 50.0 |
| Solyc06g053840.2.1 | Tomato | nucleus | 42.04 | 50.0 |
| AT4G14560.1 | Thale cress | nucleus | 37.17 | 50.0 |
| CDY36883 | Canola | nucleus | 38.05 | 50.0 |
| CDY53735 | Canola | nucleus | 38.05 | 50.0 |
| Zm00001d013071_P001 | Maize | nucleus | 39.82 | 49.72 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 41.59 | 49.21 |
| CDY35493 | Canola | nucleus | 37.17 | 49.12 |
| Bra023771.1-P | Field mustard | nucleus | 37.17 | 49.12 |
| Solyc09g083280.2.1 | Tomato | nucleus | 42.48 | 48.98 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 40.27 | 48.92 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 38.94 | 48.89 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 36.28 | 48.81 |
| Solyc04g054280.1.1 | Tomato | nucleus | 35.84 | 48.8 |
| PGSC0003DMT400015655 | Potato | nucleus | 42.04 | 48.72 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 41.15 | 48.69 |
| CDX94876 | Canola | nucleus | 36.73 | 48.54 |
| CDY40837 | Canola | nucleus | 36.73 | 48.54 |
| CDX92972 | Canola | nucleus | 36.73 | 48.54 |
| Bra001899.1-P | Field mustard | nucleus | 36.73 | 48.54 |
| Bra032521.1-P | Field mustard | nucleus | 38.5 | 48.33 |
| Bra039732.1-P | Field mustard | nucleus | 36.28 | 47.95 |
| KRH69048 | Soybean | nucleus | 40.71 | 47.92 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 39.38 | 47.85 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 39.38 | 47.85 |
| CDY10069 | Canola | nucleus | 38.94 | 47.83 |
| Bra033890.1-P | Field mustard | nucleus | 36.28 | 47.67 |
| CDY10692 | Canola | nucleus | 36.28 | 47.67 |
| Bra027504.1-P | Field mustard | nucleus | 40.27 | 47.64 |
| PGSC0003DMT400049677 | Potato | nucleus | 38.5 | 47.54 |
| CDY10346 | Canola | nucleus | 35.84 | 47.09 |
| KRH71338 | Soybean | nucleus | 41.59 | 46.53 |
| Solyc09g065850.2.1 | Tomato | nucleus | 38.05 | 46.49 |
| KRG92430 | Soybean | nucleus | 39.82 | 46.39 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 38.05 | 46.24 |
| PGSC0003DMT400013662 | Potato | cytosol | 37.17 | 44.21 |
| Solyc06g008580.2.1 | Tomato | nucleus | 36.73 | 43.68 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 60.62 | 43.63 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 31.42 | 43.29 |
| KRH32098 | Soybean | nucleus | 32.74 | 42.53 |
| KRG95613 | Soybean | nucleus | 38.05 | 42.16 |
| KRH67288 | Soybean | nucleus | 38.05 | 41.75 |
| Zm00001d033976_P002 | Maize | nucleus | 39.82 | 37.97 |
| Zm00001d013302_P002 | Maize | nucleus | 38.05 | 37.72 |
| Zm00001d036918_P001 | Maize | nucleus | 32.3 | 36.87 |
| Zm00001d039624_P001 | Maize | nucleus | 34.51 | 35.45 |
| Zm00001d037774_P001 | Maize | cytosol | 37.61 | 34.84 |
| Zm00001d008749_P002 | Maize | cytosol | 32.3 | 33.33 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 39.82 | 31.14 |
| AT3G23030.2 | Thale cress | vacuole | 35.84 | 31.03 |
| Zm00001d043878_P001 | Maize | nucleus, plastid | 35.84 | 30.11 |
| Zm00001d038980_P001 | Maize | cytosol, nucleus, plastid | 37.61 | 29.41 |
| Zm00001d009532_P001 | Maize | nucleus | 36.28 | 29.18 |
| Zm00001d041416_P001 | Maize | nucleus | 42.04 | 27.62 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 38.94 | 27.5 |
| Zm00001d010411_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 37.17 | 25.53 |
| Zm00001d011588_P003 | Maize | nucleus, plastid | 35.84 | 23.75 |
| Zm00001d024008_P001 | Maize | mitochondrion | 29.2 | 18.97 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | EMBL:BT061732 | UniProt:C0HHC6 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 |
| InterPro:IPR000270 | ProteinID:ONM07230.1 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
| PANTHER:PTHR31734:SF25 | SUPFAM:SSF54277 | UniParc:UPI00019488FD | EnsemblPlantsGene:Zm00001d033319 | EnsemblPlants:Zm00001d033319_P001 | EnsemblPlants:Zm00001d033319_T001 |
| SEG:seg | : | : | : | : | : |
Description
Aux/IAA-transcription factor 3Auxin-responsive protein IAA4
Coordinates
chr1:-:258878226..258879592
Molecular Weight (calculated)
23764.0 Da
IEP (calculated)
8.300
GRAVY (calculated)
-0.291
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: METVVGDLMA TELRLGLPGT VDDCSQPQLV KATPPSTPRG KRRATADAVE EAAGAEEASK RDAETAPPAA KAPVVGWPPV RSYRKSCFQQ ASSKQAAAAK
101: QEAAAAAPGC TASSAAATNT TSSSSAAVVV GSFVKVSMDG APYLRKVDLR MYRGYRELRE ALEALFVSSS SANNLSEFAV TYEDKDGDLM LVGDVPFEMF
201: ASTCKKLRIM KRSEATGLGS SSARQQ
101: QEAAAAAPGC TASSAAATNT TSSSSAAVVV GSFVKVSMDG APYLRKVDLR MYRGYRELRE ALEALFVSSS SANNLSEFAV TYEDKDGDLM LVGDVPFEMF
201: ASTCKKLRIM KRSEATGLGS SSARQQ
001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.