Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33104 | Sorghum | nucleus, plastid | 94.42 | 91.7 |
| TraesCS3A01G270000.1 | Wheat | nucleus, plastid | 72.12 | 74.33 |
| TraesCS3B01G303900.1 | Wheat | nucleus, plastid | 70.63 | 74.22 |
| TraesCS3D01G269700.1 | Wheat | nucleus, plastid | 71.0 | 73.75 |
| Os01t0675700-01 | Rice | nucleus | 73.61 | 73.06 |
| Zm00001d011588_P003 | Maize | nucleus, plastid | 91.82 | 72.43 |
| HORVU3Hr1G062160.2 | Barley | nucleus, plastid | 68.4 | 70.77 |
| Zm00001d009532_P001 | Maize | nucleus | 61.71 | 59.07 |
| Zm00001d038980_P001 | Maize | cytosol, nucleus, plastid | 59.11 | 55.02 |
| GSMUA_Achr2P15340_001 | Banana | nucleus | 46.1 | 50.61 |
| HORVU3Hr1G088810.1 | Barley | plastid | 44.24 | 50.21 |
| Zm00001d037774_P001 | Maize | cytosol | 45.35 | 50.0 |
| GSMUA_Achr10P... | Banana | nucleus | 46.47 | 42.81 |
| Solyc03g120500.2.1 | Tomato | nucleus | 44.24 | 42.81 |
| Zm00001d013071_P001 | Maize | nucleus | 28.62 | 42.54 |
| Zm00001d024008_P001 | Maize | mitochondrion | 54.65 | 42.24 |
| PGSC0003DMT400006548 | Potato | plastid | 40.52 | 41.76 |
| Bra011082.1-P | Field mustard | nucleus | 44.61 | 41.38 |
| KRH74730 | Soybean | plastid | 24.54 | 40.99 |
| VIT_09s0002g04080.t01 | Wine grape | nucleus | 48.7 | 40.94 |
| Zm00001d033976_P002 | Maize | nucleus | 36.06 | 40.93 |
| CDY06836 | Canola | nucleus | 38.29 | 40.87 |
| Zm00001d018973_P001 | Maize | nucleus | 30.48 | 40.59 |
| PGSC0003DMT400001013 | Potato | nucleus | 42.01 | 40.5 |
| Zm00001d039624_P001 | Maize | nucleus | 33.09 | 40.45 |
| KRH23426 | Soybean | nucleus | 45.72 | 40.07 |
| KRH09902 | Soybean | nucleus | 46.84 | 39.5 |
| VIT_11s0016g03540.t01 | Wine grape | nucleus | 46.84 | 39.38 |
| Solyc12g007230.1.1 | Tomato | nucleus | 43.12 | 39.32 |
| Zm00001d013302_P002 | Maize | nucleus | 33.09 | 39.04 |
| AT4G29080.1 | Thale cress | nucleus | 43.87 | 38.69 |
| Zm00001d010411_P001 | Maize | cytosol, endoplasmic reticulum, nucleus | 46.1 | 37.69 |
| Zm00001d036918_P001 | Maize | nucleus | 27.51 | 37.37 |
| KRH60250 | Soybean | nucleus | 39.78 | 37.28 |
| KRH39325 | Soybean | nucleus | 42.38 | 37.13 |
| KRH44313 | Soybean | nucleus | 44.24 | 36.96 |
| KRH47242 | Soybean | nucleus | 43.12 | 36.36 |
| Zm00001d013707_P001 | Maize | nucleus | 30.11 | 36.16 |
| Zm00001d008749_P002 | Maize | cytosol | 29.37 | 36.07 |
| Zm00001d033319_P001 | Maize | nucleus | 30.11 | 35.84 |
| Zm00001d041418_P001 | Maize | nucleus | 30.48 | 35.65 |
| Zm00001d030993_P001 | Maize | nucleus | 26.02 | 35.18 |
| KRH41538 | Soybean | golgi, plasma membrane | 39.78 | 29.97 |
| Zm00001d041416_P001 | Maize | nucleus | 36.43 | 28.49 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 30.11 | 25.31 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A1D6NFV5 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 |
| ProteinID:ONM39342.1 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF16 |
| SUPFAM:SSF54277 | UniParc:UPI00018CBD8A | EnsemblPlantsGene:Zm00001d043878 | EnsemblPlants:Zm00001d043878_P001 | EnsemblPlants:Zm00001d043878_T001 | SEG:seg |
Description
rootless with undetectable meristems1 rootless with undetectable meristems1
Coordinates
chr3:-:212687925..212691045
Molecular Weight (calculated)
28417.5 Da
IEP (calculated)
8.572
GRAVY (calculated)
-0.399
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPPLEPHDY IGLSAVAAAA PPTPTPTSSS SSSSSPAPRL TLRLGLPGSE SPDRDRDCCE DVAATLSLGP LPAAAAVSAK RAFPDPAQRP GASKASDAKQ
101: QASPAAPPAA KAQVVGWPPV RNYRKNTLAA ATASRSKAPA EEAASGAGPM YVKVSMDGAP YLRKVDIKMY SSYEDLSLAL EKMFSCFIAG QSGLHKSSSK
201: DRLTNGSKVD ALKDQEYVLT YEDKDADWML VGDLPWDYFT SICRKLKIMR GSDAVGIAPR TVEQTGQNK
101: QASPAAPPAA KAQVVGWPPV RNYRKNTLAA ATASRSKAPA EEAASGAGPM YVKVSMDGAP YLRKVDIKMY SSYEDLSLAL EKMFSCFIAG QSGLHKSSSK
201: DRLTNGSKVD ALKDQEYVLT YEDKDADWML VGDLPWDYFT SICRKLKIMR GSDAVGIAPR TVEQTGQNK
001: MSSGNDKIKQ VLHIEDLMSY RLLSVDKDEL VTSPCLKERN YLGLSDCSSV DSSTIPNVVG KSNLNFKATE LRLGLPESQS PERETDFGLL SPRTPDEKLL
101: FPLLPSKDNG SATTGHKNVV SGNKRGFADT WDEFSGVKGS VRPGGGINMM LSPKVKDVSK SIQEERSHAK GGLNNAPAAK AQVVGWPPIR SYRKNTMASS
201: TSKNTDEVDG KPGLGVLFVK VSMDGAPYLR KVDLRTYTSY QQLSSALEKM FSCFTLGQCG LHGAQGRERM SEIKLKDLLH GSEFVLTYED KDGDWMLVGD
301: VPWEIFTETC QKLKIMKGSD SIGLAPGAVE KSKNKERV
101: FPLLPSKDNG SATTGHKNVV SGNKRGFADT WDEFSGVKGS VRPGGGINMM LSPKVKDVSK SIQEERSHAK GGLNNAPAAK AQVVGWPPIR SYRKNTMASS
201: TSKNTDEVDG KPGLGVLFVK VSMDGAPYLR KVDLRTYTSY QQLSSALEKM FSCFTLGQCG LHGAQGRERM SEIKLKDLLH GSEFVLTYED KDGDWMLVGD
301: VPWEIFTETC QKLKIMKGSD SIGLAPGAVE KSKNKERV
Arabidopsis Description
IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.