Factsheet for Solyc04g054280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g037530.2.1
Solyc03g031970.2.1
Solyc03g059310.2.1
Solyc03g120380.2.1
Solyc03g121060.2.1
Solyc04g054280.1.1
Solyc04g081240.2.1
Solyc05g009260.1.1
Solyc06g007830.1.1
Solyc06g007840.2.1
Solyc06g008440.1.1
Solyc06g008460.1.1
Solyc06g008470.1.1
Solyc06g008780.1.1
Solyc06g008810.2.1
Solyc06g053840.2.1
Solyc06g084490.1.1
Solyc07g042260.2.1
Solyc08g008380.2.1
Solyc08g082630.2.1
Solyc09g074520.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14560.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT4G14560.1	Solyc09g083290.2.1	AT1G04250.1	9342315
AT4G14560.1	Solyc07g042260.2.1	AT1G19220.1	9342315
AT4G14560.1	Solyc04g081240.2.1	AT1G19850.1	14729917
AT4G14560.1	Solyc04g081240.2.1	AT1G19850.1	21734647
AT4G14560.1	Solyc04g081240.2.1	AT1G19850.1	9342315
AT4G14560.1	Solyc03g121060.2.1	AT1G51950.1	21798944
AT4G14560.1	Solyc03g120380.2.1	AT3G15540.1	21734647
AT4G14560.1	Solyc03g120380.2.1	AT3G15540.1	9342315
AT4G14560.1	Solyc03g059310.2.1	AT3G18140.1	21798944
AT4G14560.1	Solyc09g083290.2.1	AT3G23050.1	21734647
AT4G14560.1	Solyc05g009260.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g007830.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g007840.2.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008440.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008460.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008470.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008780.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008810.2.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g084490.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc09g074520.2.1	AT3G62980.1	15546359
AT4G14560.1	Solyc04g054280.1.1	AT4G14560.1	14729917
AT4G14560.1	Solyc06g053840.2.1	AT4G14560.1	14729917
AT4G14560.1	Solyc09g083280.2.1	AT4G14560.1	14729917
AT4G14560.1	Solyc04g054280.1.1	AT4G14560.1	21734647
AT4G14560.1	Solyc06g053840.2.1	AT4G14560.1	21734647
AT4G14560.1	Solyc09g083280.2.1	AT4G14560.1	21734647
AT4G14560.1	Solyc04g054280.1.1	AT4G14560.1	21798944
AT4G14560.1	Solyc06g053840.2.1	AT4G14560.1	21798944
AT4G14560.1	Solyc09g083280.2.1	AT4G14560.1	21798944
AT4G14560.1	Solyc04g054280.1.1	AT4G14560.1	9342315
AT4G14560.1	Solyc06g053840.2.1	AT4G14560.1	9342315
AT4G14560.1	Solyc09g083280.2.1	AT4G14560.1	9342315
AT4G14560.1	Solyc08g008380.2.1	AT4G23980.1	21734647
AT4G14560.1	Solyc08g082630.2.1	AT4G23980.1	21734647
AT4G14560.1	Solyc07g042260.2.1	AT5G20730.1	14729917
AT4G14560.1	Solyc07g042260.2.1	AT5G20730.1	9342315
AT4G14560.1	Solyc02g037530.2.1	AT5G37020.1	14729917
AT4G14560.1	Solyc03g031970.2.1	AT5G37020.1	14729917
AT4G14560.1	Solyc04g054280.1.1	AT5G43700.1	21734647
AT4G14560.1	Solyc06g053840.2.1	AT5G43700.1	21734647
AT4G14560.1	Solyc09g083280.2.1	AT5G43700.1	21734647
AT4G14560.1	Solyc04g054280.1.1	AT5G43700.1	9342315
AT4G14560.1	Solyc06g053840.2.1	AT5G43700.1	9342315
AT4G14560.1	Solyc09g083280.2.1	AT5G43700.1	9342315
AT5G43700.1	Solyc07g042260.2.1	AT1G19220.1	21734647
AT5G43700.1	Solyc04g081240.2.1	AT1G19850.1	21734647
AT5G43700.1	Solyc03g121060.2.1	AT1G51950.1	21734647
AT5G43700.1	Solyc03g120380.2.1	AT3G15540.1	21734647
AT5G43700.1	Solyc04g054280.1.1	AT4G14560.1	9342315
AT5G43700.1	Solyc06g053840.2.1	AT4G14560.1	9342315
AT5G43700.1	Solyc09g083280.2.1	AT4G14560.1	9342315
AT5G43700.1	Solyc07g042260.2.1	AT5G20730.1	21734647
AT5G43700.1	Solyc04g054280.1.1	AT5G43700.1	21734647
AT5G43700.1	Solyc06g053840.2.1	AT5G43700.1	21734647
AT5G43700.1	Solyc09g083280.2.1	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34375	Soybean	cytosol, nucleus	48.8	66.39
PGSC0003DMT400034978	Potato	cytosol, mitochondrion, nucleus	58.43	59.15
Solyc09g083280.2.1	Tomato	nucleus	66.27	56.12
Solyc06g053840.2.1	Tomato	nucleus	63.86	55.79
Solyc06g084070.2.1	Tomato	nucleus, plastid	51.2	54.49
GSMUA_Achr9P10690_001	Banana	cytosol, mitochondrion, nucleus	44.58	54.41
CDX94876	Canola	nucleus	56.02	54.39
CDX92972	Canola	nucleus	55.42	53.8
Bra001899.1-P	Field mustard	nucleus	55.42	53.8
Bra032521.1-P	Field mustard	nucleus	57.83	53.33
Bra023771.1-P	Field mustard	nucleus	54.82	53.22
CDY40837	Canola	nucleus	54.82	53.22
CDY35493	Canola	nucleus	54.82	53.22
Bra033890.1-P	Field mustard	nucleus	54.82	52.91
CDY10692	Canola	nucleus	54.82	52.91
GSMUA_Achr4P05200_001	Banana	mitochondrion	39.76	52.8
CDY32536	Canola	cytosol, nucleus, plastid	57.23	52.78
AT5G43700.1	Thale cress	cytosol, extracellular, nucleus	59.04	52.69
CDY32934	Canola	cytosol, nucleus, plastid	60.24	52.36
CDY10346	Canola	nucleus	54.22	52.33
CDY10069	Canola	nucleus	57.83	52.17
Bra015297.1-P	Field mustard	cytosol, nucleus, plastid	58.43	52.15
CDX89833	Canola	cytosol, nucleus, plastid	58.43	52.15
CDY69497	Canola	cytosol, nucleus, plastid	59.64	51.83
Bra027504.1-P	Field mustard	nucleus	59.64	51.83
AT4G14560.1	Thale cress	nucleus	51.81	51.19
GSMUA_Achr5P03110_001	Banana	nucleus	51.2	50.6
KRG92430	Soybean	nucleus	59.04	50.52
CDY36883	Canola	nucleus	51.81	50.0
CDY18213	Canola	cytosol, nucleus, plastid	56.02	50.0
KRH69048	Soybean	nucleus	56.63	48.96
Solyc06g008580.2.1	Tomato	nucleus	56.02	48.95
CDY53735	Canola	nucleus	50.6	48.84
Solyc09g065850.2.1	Tomato	nucleus	53.61	48.11
GSMUA_Achr4P22530_001	Banana	nucleus	52.41	48.07
VIT_05s0020g04680.t01	Wine grape	nucleus	48.19	47.62
GSMUA_Achr9P24330_001	Banana	nucleus	48.8	47.37
Bra039732.1-P	Field mustard	nucleus	48.8	47.37
GSMUA_Achr4P21030_001	Banana	nucleus	55.42	46.46
GSMUA_Achr11P...	Banana	nucleus	48.19	45.98
Solyc03g120380.2.1	Tomato	nucleus	52.41	45.31
GSMUA_Achr8P20620_001	Banana	nucleus	50.6	44.68
Os12t0601400-01	Rice	nucleus	53.01	44.67
EER98076	Sorghum	cytosol, mitochondrion, nucleus	52.41	43.72
Zm00001d013071_P001	Maize	nucleus	46.99	43.09
TraesCS5B01G446100.1	Wheat	cytosol, mitochondrion, nucleus	45.78	42.94
TraesCS5D01G449400.1	Wheat	nucleus	46.39	42.54
GSMUA_Achr2P12630_001	Banana	nucleus	51.81	42.36
Solyc06g008590.2.1	Tomato	nucleus	53.01	42.31
TraesCS5A01G058700.1	Wheat	cytosol	53.61	41.59
TraesCS5B01G058800.1	Wheat	cytosol	53.61	41.59
TraesCS5D01G069200.1	Wheat	cytosol	53.61	41.59
Zm00001d018973_P001	Maize	nucleus	50.0	41.09
EER90734	Sorghum	cytosol, nucleus, plastid	45.18	40.32
Solyc06g053830.2.1	Tomato	nucleus	52.41	39.91
Os07t0182400-01	Rice	plastid	51.2	38.81
Zm00001d041418_P001	Maize	nucleus	53.61	38.7
Os03t0633800-01	Rice	nucleus	51.81	38.05
EER93778	Sorghum	cytosol, nucleus, plastid	51.81	38.05
TraesCS5D01G388200.1	Wheat	nucleus	48.8	37.67
Os03t0797800-01	Rice	nucleus	44.58	37.56
Zm00001d013707_P001	Maize	nucleus	50.6	37.5
Solyc01g097290.2.1	Tomato	nucleus	56.63	37.45
Solyc09g083290.2.1	Tomato	nucleus	53.01	37.29
TraesCS5B01G381800.1	Wheat	nucleus	46.99	36.79
TraesCS5A01G378200.1	Wheat	nucleus	46.39	36.32
Zm00001d033319_P001	Maize	nucleus	48.8	35.84
EES16315	Sorghum	cytosol	52.41	35.66
AT3G23030.2	Thale cress	vacuole	55.42	35.25
HORVU5Hr1G106350.2	Barley	plastid	46.99	34.67
Zm00001d030993_P001	Maize	nucleus	40.36	33.67
AT1G04240.2	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	58.43	33.56
Solyc03g120500.2.1	Tomato	nucleus	54.22	32.37
Solyc03g120390.2.1	Tomato	nucleus, plastid	48.19	31.75
Solyc12g007230.1.1	Tomato	nucleus	55.42	31.19
HORVU5Hr1G014290.1	Barley	mitochondrion	42.77	27.73
HORVU5Hr1G093640.1	Barley	mitochondrion	49.4	26.11
Solyc04g076850.2.1	Tomato	nucleus	53.01	25.21
Zm00001d034463_P001	Maize	extracellular, golgi	45.78	23.75

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:G9HPW9	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EMBL:JN379448	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF11
SUPFAM:SSF54277	EnsemblPlantsGene:Solyc04g054280.1	EnsemblPlants:Solyc04g054280.1.1	UniParc:UPI000243DC0C	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:G9HPW9]

Coordinates

chr4:+:52274108..52275594

Molecular Weight (calculated)

19295.5 Da

IEP (calculated)

8.777

GRAVY (calculated)

-0.730

Length

166 amino acids

Sequence
(BLAST)

001: MERDLNLRLG LPGREEDQYD HQQIMSISKN NKRALSEYED DEATTPRVTK VQIVGWPPVR CYRKNTLQNT TKQTEDQCGI YVKVSMDGAP FCRKIDLKMY
101: KCYTQLLKAM EKMFKLKKGE FSPTYEDKDG DLMLVGDVPW EMFMSSCKRL RIMKRSEARG LGSCGL

Best Arabidopsis Sequence Match ( AT1G04240.1 )
(BLAST)

001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV

Arabidopsis Description

SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.