Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5A01G058700.1 | Wheat | cytosol | 69.54 | 64.02 |
TraesCS5B01G058800.1 | Wheat | cytosol | 69.54 | 64.02 |
TraesCS5D01G069200.1 | Wheat | cytosol | 69.54 | 64.02 |
Zm00001d041418_P001 | Maize | nucleus | 74.62 | 63.91 |
KRH34375 | Soybean | cytosol, nucleus | 39.09 | 63.11 |
EES16315 | Sorghum | cytosol | 75.63 | 61.07 |
GSMUA_Achr4P05200_001 | Banana | mitochondrion | 38.58 | 60.8 |
PGSC0003DMT400051896 | Potato | plastid | 44.16 | 56.86 |
Solyc06g084070.2.1 | Tomato | nucleus, plastid | 44.16 | 55.77 |
Os03t0633800-01 | Rice | nucleus | 63.45 | 55.31 |
GSMUA_Achr9P24330_001 | Banana | nucleus | 47.21 | 54.39 |
Zm00001d030993_P001 | Maize | nucleus | 54.82 | 54.27 |
Solyc04g054280.1.1 | Tomato | nucleus | 44.67 | 53.01 |
Bra001899.1-P | Field mustard | nucleus | 45.69 | 52.63 |
CDX92972 | Canola | nucleus | 45.69 | 52.63 |
CDY32536 | Canola | cytosol, nucleus, plastid | 47.72 | 52.22 |
VIT_07s0141g00270.t01 | Wine grape | nucleus | 49.24 | 52.15 |
Solyc06g053840.2.1 | Tomato | nucleus | 50.25 | 52.11 |
PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 50.25 | 52.11 |
CDX94876 | Canola | nucleus | 45.18 | 52.05 |
PGSC0003DMT400049677 | Potato | nucleus | 48.22 | 51.91 |
AT4G14560.1 | Thale cress | nucleus | 44.16 | 51.79 |
GSMUA_Achr11P... | Banana | nucleus | 45.69 | 51.72 |
Bra023771.1-P | Field mustard | nucleus | 44.67 | 51.46 |
CDY35493 | Canola | nucleus | 44.67 | 51.46 |
Solyc09g065850.2.1 | Tomato | nucleus | 48.22 | 51.35 |
VIT_14s0030g02310.t01 | Wine grape | nucleus | 51.78 | 51.26 |
Bra032521.1-P | Field mustard | nucleus | 46.7 | 51.11 |
CDY10069 | Canola | nucleus | 47.72 | 51.09 |
Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 48.22 | 51.08 |
AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 48.22 | 51.08 |
CDX89833 | Canola | cytosol, nucleus, plastid | 48.22 | 51.08 |
CDY40837 | Canola | nucleus | 44.16 | 50.88 |
CDY10692 | Canola | nucleus | 44.16 | 50.58 |
Bra033890.1-P | Field mustard | nucleus | 44.16 | 50.58 |
CDY18213 | Canola | cytosol, nucleus, plastid | 47.72 | 50.54 |
CDY69497 | Canola | cytosol, nucleus, plastid | 48.73 | 50.26 |
CDY32934 | Canola | cytosol, nucleus, plastid | 48.73 | 50.26 |
Bra027504.1-P | Field mustard | nucleus | 48.73 | 50.26 |
CDY10346 | Canola | nucleus | 43.65 | 50.0 |
Solyc09g083280.2.1 | Tomato | nucleus | 49.24 | 49.49 |
PGSC0003DMT400015655 | Potato | nucleus | 48.73 | 49.23 |
KRH71338 | Soybean | nucleus | 50.25 | 49.01 |
KRG92430 | Soybean | nucleus | 48.22 | 48.97 |
KRH69048 | Soybean | nucleus | 47.72 | 48.96 |
VIT_05s0020g04680.t01 | Wine grape | nucleus | 41.62 | 48.81 |
PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 40.61 | 48.78 |
CDY36883 | Canola | nucleus | 42.13 | 48.26 |
HORVU5Hr1G014290.1 | Barley | mitochondrion | 60.91 | 46.88 |
PGSC0003DMT400013662 | Potato | cytosol | 45.18 | 46.84 |
CDY53735 | Canola | nucleus | 40.61 | 46.51 |
Bra039732.1-P | Field mustard | nucleus | 40.1 | 46.2 |
Solyc06g008580.2.1 | Tomato | nucleus | 44.16 | 45.79 |
KRH32098 | Soybean | nucleus | 40.1 | 45.4 |
Os07t0182400-01 | Rice | plastid | 50.25 | 45.21 |
KRH67288 | Soybean | nucleus | 47.21 | 45.15 |
KRG95613 | Soybean | nucleus | 46.7 | 45.1 |
Os03t0797800-01 | Rice | nucleus | 44.16 | 44.16 |
Os01t0178500-02 | Rice | nucleus | 39.09 | 38.69 |
Os03t0742900-01 | Rice | vacuole | 43.65 | 36.44 |
Os06t0335500-01 | Rice | nucleus | 48.22 | 35.71 |
Os03t0633500-01 | Rice | cytosol | 42.13 | 35.62 |
Os05t0230700-01 | Rice | nucleus | 45.69 | 35.02 |
Os01t0231000-01 | Rice | nucleus | 45.18 | 33.84 |
Os12t0601300-01 | Rice | nucleus | 46.7 | 33.21 |
AT3G23030.2 | Thale cress | vacuole | 43.65 | 32.95 |
AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 48.22 | 32.87 |
Os05t0178600-01 | Rice | nucleus | 35.03 | 32.55 |
Os01t0675700-01 | Rice | nucleus | 43.15 | 31.37 |
Os05t0559400-01 | Rice | nucleus | 42.64 | 29.89 |
Protein Annotations
Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:4352722 | ProteinID:ABA99794.1 | EMBL:AK073361 | InterPro:AUX/IAA_dom |
InterPro:AUX_IAA | ProteinID:BAF30229.1 | ProteinID:BAT17960.1 | ProteinID:EAZ21123.1 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | EnsemblPlantsGene:Os12g0601400 |
EnsemblPlants:Os12t0601400-01 | UniProt:P0C133 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 |
PANTHER:PTHR31734:SF8 | SUPFAM:SSF54277 | UniParc:UPI0000680CAA | RefSeq:XP_015618566.1 | SEG:seg | : |
Description
IAA31Similar to Auxin-responsive protein (Aux/IAA) (Fragment). (Os12t0601400-01)
Coordinates
chr12:+:25325555..25327111
Molecular Weight (calculated)
20904.1 Da
IEP (calculated)
9.122
GRAVY (calculated)
-0.339
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MENLKATELR LGLPGTEEEA APPPSTPRAG SKRALAGEPD QAKIKPAAAA KAQVVGWPPV RSYRKSCLQP TTTTTKSKPP PAAAAAETQQ KEDVAGAGGL
101: FVKVSMDGAP YLRKIDLKVY KGYRELREAL EAMFLCFSGG AAADAAVNPS DFAVTYEDKD GDLMLVGDVP FEMFISTCKR LRIMKGSEAR GLGATRG
101: FVKVSMDGAP YLRKIDLKVY KGYRELREAL EAMFLCFSGG AAADAAVNPS DFAVTYEDKD GDLMLVGDVP FEMFISTCKR LRIMKGSEAR GLGATRG
001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.