Skip to main content
crop-pal logo
Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 2
PPI

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G14560.1 Os03t0633500-01 AT1G04250.1 21734647
AT4G14560.1 Os03t0742900-01 AT1G04250.1 21734647
AT4G14560.1 Os12t0601300-01 AT1G04250.1 21734647
AT4G14560.1 Os03t0633500-01 AT1G04250.1 9342315
AT4G14560.1 Os03t0742900-01 AT1G04250.1 9342315
AT4G14560.1 Os12t0601300-01 AT1G04250.1 9342315
AT4G14560.1 Os06t0196700-02 AT1G19220.1 9342315
AT4G14560.1 Os04t0664400-01 AT1G19850.1 14729917
AT4G14560.1 Os04t0664400-01 AT1G19850.1 21734647
AT4G14560.1 Os04t0664400-01 AT1G19850.1 9342315
AT4G14560.1 Os01t0190300-01 AT1G51950.1 21798944
AT4G14560.1 Os01t0741900-01 AT1G51950.1 21798944
AT4G14560.1 Os02t0228900-01 AT1G51950.1 21798944
AT4G14560.1 Os05t0523300-01 AT1G51950.1 21798944
AT4G14560.1 Os01t0286900-01 AT2G46990.1 9342315
AT4G14560.1 Os02t0723400-02 AT2G46990.1 9342315
AT4G14560.1 Os03t0633500-01 AT3G04730.1 21734647
AT4G14560.1 Os03t0742900-01 AT3G04730.1 21734647
AT4G14560.1 Os12t0601300-01 AT3G04730.1 21734647
AT4G14560.1 Os03t0633500-01 AT3G04730.1 21798944
AT4G14560.1 Os03t0742900-01 AT3G04730.1 21798944
AT4G14560.1 Os12t0601300-01 AT3G04730.1 21798944
AT4G14560.1 Os03t0633500-01 AT3G04730.1 9342315
AT4G14560.1 Os03t0742900-01 AT3G04730.1 9342315
AT4G14560.1 Os12t0601300-01 AT3G04730.1 9342315
AT4G14560.1 Os01t0286900-01 AT3G17600.1 21734647
AT4G14560.1 Os02t0723400-02 AT3G17600.1 21734647
AT4G14560.1 Os03t0681700-01 AT3G18140.1 21798944
AT4G14560.1 Os03t0633500-01 AT3G23050.1 21734647
AT4G14560.1 Os03t0742900-01 AT3G23050.1 21734647
AT4G14560.1 Os12t0601300-01 AT3G23050.1 21734647
AT4G14560.1 Os05t0150500-00 AT3G62980.1 15546359
AT4G14560.1 Os03t0633800-01 AT4G14560.1 14729917
AT4G14560.1 Os03t0797800-01 AT4G14560.1 14729917
AT4G14560.1 Os07t0182400-01 AT4G14560.1 14729917
AT4G14560.1 Os12t0601400-01 AT4G14560.1 14729917
AT4G14560.1 Os03t0633800-01 AT4G14560.1 21734647
AT4G14560.1 Os03t0797800-01 AT4G14560.1 21734647
AT4G14560.1 Os07t0182400-01 AT4G14560.1 21734647
AT4G14560.1 Os12t0601400-01 AT4G14560.1 21734647
AT4G14560.1 Os03t0633800-01 AT4G14560.1 21798944
AT4G14560.1 Os03t0797800-01 AT4G14560.1 21798944
AT4G14560.1 Os07t0182400-01 AT4G14560.1 21798944
AT4G14560.1 Os12t0601400-01 AT4G14560.1 21798944
AT4G14560.1 Os03t0633800-01 AT4G14560.1 9342315
AT4G14560.1 Os03t0797800-01 AT4G14560.1 9342315
AT4G14560.1 Os07t0182400-01 AT4G14560.1 9342315
AT4G14560.1 Os12t0601400-01 AT4G14560.1 9342315
AT4G14560.1 Os01t0236300-01 AT4G23980.1 21734647
AT4G14560.1 Os06t0196700-02 AT5G20730.1 14729917
AT4G14560.1 Os06t0196700-02 AT5G20730.1 9342315
AT4G14560.1 Os01t0190300-01 AT5G25890.1 21798944
AT4G14560.1 Os01t0741900-01 AT5G25890.1 21798944
AT4G14560.1 Os02t0228900-01 AT5G25890.1 21798944
AT4G14560.1 Os05t0523300-01 AT5G25890.1 21798944
AT4G14560.1 Os04t0671900-01 AT5G37020.1 14729917
AT4G14560.1 Os03t0633800-01 AT5G43700.1 21734647
AT4G14560.1 Os03t0797800-01 AT5G43700.1 21734647
AT4G14560.1 Os07t0182400-01 AT5G43700.1 21734647
AT4G14560.1 Os12t0601400-01 AT5G43700.1 21734647
AT4G14560.1 Os03t0633800-01 AT5G43700.1 9342315
AT4G14560.1 Os03t0797800-01 AT5G43700.1 9342315
AT4G14560.1 Os07t0182400-01 AT5G43700.1 9342315
AT4G14560.1 Os12t0601400-01 AT5G43700.1 9342315
AT5G43700.1 Os06t0196700-02 AT1G19220.1 21734647
AT5G43700.1 Os04t0664400-01 AT1G19850.1 21734647
AT5G43700.1 Os01t0190300-01 AT1G51950.1 21734647
AT5G43700.1 Os01t0741900-01 AT1G51950.1 21734647
AT5G43700.1 Os02t0228900-01 AT1G51950.1 21734647
AT5G43700.1 Os05t0523300-01 AT1G51950.1 21734647
AT5G43700.1 Os01t0286900-01 AT2G46990.1 21734647
AT5G43700.1 Os02t0723400-02 AT2G46990.1 21734647
AT5G43700.1 Os03t0633500-01 AT3G04730.1 21734647
AT5G43700.1 Os03t0742900-01 AT3G04730.1 21734647
AT5G43700.1 Os12t0601300-01 AT3G04730.1 21734647
AT5G43700.1 Os03t0633800-01 AT4G14560.1 9342315
AT5G43700.1 Os03t0797800-01 AT4G14560.1 9342315
AT5G43700.1 Os07t0182400-01 AT4G14560.1 9342315
AT5G43700.1 Os12t0601400-01 AT4G14560.1 9342315
AT5G43700.1 Os06t0196700-02 AT5G20730.1 21734647
AT5G43700.1 Os01t0190300-01 AT5G25890.1 21734647
AT5G43700.1 Os01t0741900-01 AT5G25890.1 21734647
AT5G43700.1 Os02t0228900-01 AT5G25890.1 21734647
AT5G43700.1 Os05t0523300-01 AT5G25890.1 21734647
AT5G43700.1 Os03t0633800-01 AT5G43700.1 21734647
AT5G43700.1 Os03t0797800-01 AT5G43700.1 21734647
AT5G43700.1 Os07t0182400-01 AT5G43700.1 21734647
AT5G43700.1 Os12t0601400-01 AT5G43700.1 21734647
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5A01G058700.1 Wheat cytosol 69.54 64.02
TraesCS5B01G058800.1 Wheat cytosol 69.54 64.02
TraesCS5D01G069200.1 Wheat cytosol 69.54 64.02
Zm00001d041418_P001 Maize nucleus 74.62 63.91
KRH34375 Soybean cytosol, nucleus 39.09 63.11
EES16315 Sorghum cytosol 75.63 61.07
GSMUA_Achr4P05200_001 Banana mitochondrion 38.58 60.8
PGSC0003DMT400051896 Potato plastid 44.16 56.86
Solyc06g084070.2.1 Tomato nucleus, plastid 44.16 55.77
Os03t0633800-01 Rice nucleus 63.45 55.31
GSMUA_Achr9P24330_001 Banana nucleus 47.21 54.39
Zm00001d030993_P001 Maize nucleus 54.82 54.27
Solyc04g054280.1.1 Tomato nucleus 44.67 53.01
Bra001899.1-P Field mustard nucleus 45.69 52.63
CDX92972 Canola nucleus 45.69 52.63
CDY32536 Canola cytosol, nucleus, plastid 47.72 52.22
VIT_07s0141g00270.t01 Wine grape nucleus 49.24 52.15
Solyc06g053840.2.1 Tomato nucleus 50.25 52.11
PGSC0003DMT400042074 Potato cytosol, nucleus, plastid 50.25 52.11
CDX94876 Canola nucleus 45.18 52.05
PGSC0003DMT400049677 Potato nucleus 48.22 51.91
AT4G14560.1 Thale cress nucleus 44.16 51.79
GSMUA_Achr11P... Banana nucleus 45.69 51.72
Bra023771.1-P Field mustard nucleus 44.67 51.46
CDY35493 Canola nucleus 44.67 51.46
Solyc09g065850.2.1 Tomato nucleus 48.22 51.35
VIT_14s0030g02310.t01 Wine grape nucleus 51.78 51.26
Bra032521.1-P Field mustard nucleus 46.7 51.11
CDY10069 Canola nucleus 47.72 51.09
Bra015297.1-P Field mustard cytosol, nucleus, plastid 48.22 51.08
AT5G43700.1 Thale cress cytosol, extracellular, nucleus 48.22 51.08
CDX89833 Canola cytosol, nucleus, plastid 48.22 51.08
CDY40837 Canola nucleus 44.16 50.88
CDY10692 Canola nucleus 44.16 50.58
Bra033890.1-P Field mustard nucleus 44.16 50.58
CDY18213 Canola cytosol, nucleus, plastid 47.72 50.54
CDY69497 Canola cytosol, nucleus, plastid 48.73 50.26
CDY32934 Canola cytosol, nucleus, plastid 48.73 50.26
Bra027504.1-P Field mustard nucleus 48.73 50.26
CDY10346 Canola nucleus 43.65 50.0
Solyc09g083280.2.1 Tomato nucleus 49.24 49.49
PGSC0003DMT400015655 Potato nucleus 48.73 49.23
KRH71338 Soybean nucleus 50.25 49.01
KRG92430 Soybean nucleus 48.22 48.97
KRH69048 Soybean nucleus 47.72 48.96
VIT_05s0020g04680.t01 Wine grape nucleus 41.62 48.81
PGSC0003DMT400034978 Potato cytosol, mitochondrion, nucleus 40.61 48.78
CDY36883 Canola nucleus 42.13 48.26
HORVU5Hr1G014290.1 Barley mitochondrion 60.91 46.88
PGSC0003DMT400013662 Potato cytosol 45.18 46.84
CDY53735 Canola nucleus 40.61 46.51
Bra039732.1-P Field mustard nucleus 40.1 46.2
Solyc06g008580.2.1 Tomato nucleus 44.16 45.79
KRH32098 Soybean nucleus 40.1 45.4
Os07t0182400-01 Rice plastid 50.25 45.21
KRH67288 Soybean nucleus 47.21 45.15
KRG95613 Soybean nucleus 46.7 45.1
Os03t0797800-01 Rice nucleus 44.16 44.16
Os01t0178500-02 Rice nucleus 39.09 38.69
Os03t0742900-01 Rice vacuole 43.65 36.44
Os06t0335500-01 Rice nucleus 48.22 35.71
Os03t0633500-01 Rice cytosol 42.13 35.62
Os05t0230700-01 Rice nucleus 45.69 35.02
Os01t0231000-01 Rice nucleus 45.18 33.84
Os12t0601300-01 Rice nucleus 46.7 33.21
AT3G23030.2 Thale cress vacuole 43.65 32.95
AT1G04240.2 Thale cress cytosol, endoplasmic reticulum, nucleus, plastid 48.22 32.87
Os05t0178600-01 Rice nucleus 35.03 32.55
Os01t0675700-01 Rice nucleus 43.15 31.37
Os05t0559400-01 Rice nucleus 42.64 29.89
Protein Annotations
Gene3D:3.10.20.90MapMan:35.1EntrezGene:4352722ProteinID:ABA99794.1EMBL:AK073361InterPro:AUX/IAA_dom
InterPro:AUX_IAAProteinID:BAF30229.1ProteinID:BAT17960.1ProteinID:EAZ21123.1GO:GO:0003674GO:GO:0005488
GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006351GO:GO:0006355GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009719GO:GO:0009734GO:GO:0009987InterPro:IPR000270EnsemblPlantsGene:Os12g0601400
EnsemblPlants:Os12t0601400-01UniProt:P0C133InterPro:PB1_domPFAM:PF02309PFscan:PS51745PANTHER:PTHR31734
PANTHER:PTHR31734:SF8SUPFAM:SSF54277UniParc:UPI0000680CAARefSeq:XP_015618566.1SEG:seg:
Description
IAA31Similar to Auxin-responsive protein (Aux/IAA) (Fragment). (Os12t0601400-01)
Coordinates
chr12:+:25325555..25327111
Molecular Weight (calculated)
20904.1 Da
IEP (calculated)
9.122
GRAVY (calculated)
-0.339
Length
197 amino acids
Sequence
(BLAST)
001: MENLKATELR LGLPGTEEEA APPPSTPRAG SKRALAGEPD QAKIKPAAAA KAQVVGWPPV RSYRKSCLQP TTTTTKSKPP PAAAAAETQQ KEDVAGAGGL
101: FVKVSMDGAP YLRKIDLKVY KGYRELREAL EAMFLCFSGG AAADAAVNPS DFAVTYEDKD GDLMLVGDVP FEMFISTCKR LRIMKGSEAR GLGATRG
Best Arabidopsis Sequence Match ( AT1G04240.2 )
(BLAST)
001: MGEKESVPTN VPKKMGHTFA SKLLLLLPTS LAFFPLSLIQ KTVSSLSTSI YLYSPLTCIK HSASSKPLIF IISSFSISLL SFKDNNQKLF FLSSPAILEE
101: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
201: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [endoplasmic reticulum,plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.