Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G446100.1 | Wheat | cytosol, mitochondrion, nucleus | 67.51 | 75.14 |
| TraesCS5D01G449400.1 | Wheat | nucleus | 67.51 | 73.48 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 65.48 | 69.35 |
| Zm00001d013071_P001 | Maize | nucleus | 62.44 | 67.96 |
| HORVU5Hr1G106350.2 | Barley | plastid | 69.04 | 60.44 |
| KRH34375 | Soybean | cytosol, nucleus | 34.01 | 54.92 |
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 34.52 | 54.4 |
| AT4G14560.1 | Thale cress | nucleus | 40.61 | 47.62 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 37.56 | 47.44 |
| CDY53735 | Canola | nucleus | 41.12 | 47.09 |
| PGSC0003DMT400051896 | Potato | plastid | 36.55 | 47.06 |
| CDY36883 | Canola | nucleus | 40.1 | 45.93 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 43.15 | 45.7 |
| Os07t0182400-01 | Rice | plastid | 50.76 | 45.66 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 39.59 | 45.61 |
| Bra039732.1-P | Field mustard | nucleus | 39.59 | 45.61 |
| Bra001899.1-P | Field mustard | nucleus | 39.09 | 45.03 |
| CDY40837 | Canola | nucleus | 39.09 | 45.03 |
| CDX94876 | Canola | nucleus | 39.09 | 45.03 |
| CDX92972 | Canola | nucleus | 39.09 | 45.03 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 45.18 | 44.72 |
| Solyc04g054280.1.1 | Tomato | nucleus | 37.56 | 44.58 |
| Bra023771.1-P | Field mustard | nucleus | 38.58 | 44.44 |
| CDY35493 | Canola | nucleus | 38.58 | 44.44 |
| PGSC0003DMT400049677 | Potato | nucleus | 41.12 | 44.26 |
| GSMUA_Achr11P... | Banana | nucleus | 39.09 | 44.25 |
| CDY10692 | Canola | nucleus | 38.58 | 44.19 |
| Bra033890.1-P | Field mustard | nucleus | 38.58 | 44.19 |
| Os12t0601400-01 | Rice | nucleus | 44.16 | 44.16 |
| Solyc09g065850.2.1 | Tomato | nucleus | 41.12 | 43.78 |
| Solyc06g053840.2.1 | Tomato | nucleus | 42.13 | 43.68 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 42.13 | 43.68 |
| CDY10346 | Canola | nucleus | 38.07 | 43.6 |
| KRH69048 | Soybean | nucleus | 42.13 | 43.23 |
| Solyc09g083280.2.1 | Tomato | nucleus | 42.64 | 42.86 |
| PGSC0003DMT400013662 | Potato | cytosol | 41.12 | 42.63 |
| Solyc06g008580.2.1 | Tomato | nucleus | 41.12 | 42.63 |
| PGSC0003DMT400015655 | Potato | nucleus | 42.13 | 42.56 |
| Bra032521.1-P | Field mustard | nucleus | 38.58 | 42.22 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 38.58 | 42.22 |
| KRH71338 | Soybean | nucleus | 43.15 | 42.08 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 35.03 | 42.07 |
| Os03t0633800-01 | Rice | nucleus | 48.22 | 42.04 |
| KRH32098 | Soybean | nucleus | 37.06 | 41.95 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 39.59 | 41.94 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 40.61 | 41.88 |
| Bra027504.1-P | Field mustard | nucleus | 40.61 | 41.88 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 40.61 | 41.88 |
| CDY10069 | Canola | nucleus | 39.09 | 41.85 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 39.09 | 41.4 |
| KRG92430 | Soybean | nucleus | 40.61 | 41.24 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 35.03 | 41.07 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 38.58 | 40.86 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 38.58 | 40.86 |
| KRH67288 | Soybean | nucleus | 42.64 | 40.78 |
| KRG95613 | Soybean | nucleus | 42.13 | 40.69 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 62.94 | 38.75 |
| Os01t0178500-02 | Rice | nucleus | 34.01 | 33.67 |
| Os03t0742900-01 | Rice | vacuole | 39.59 | 33.05 |
| Os05t0230700-01 | Rice | nucleus | 41.62 | 31.91 |
| Os03t0633500-01 | Rice | cytosol | 37.06 | 31.33 |
| Os06t0335500-01 | Rice | nucleus | 41.62 | 30.83 |
| Os05t0178600-01 | Rice | nucleus | 32.49 | 30.19 |
| Os01t0231000-01 | Rice | nucleus | 40.1 | 30.04 |
| Os12t0601300-01 | Rice | nucleus | 42.13 | 29.96 |
| Os01t0675700-01 | Rice | nucleus | 41.12 | 29.89 |
| AT3G23030.2 | Thale cress | vacuole | 38.07 | 28.74 |
| Os05t0559400-01 | Rice | nucleus | 40.1 | 28.11 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 41.12 | 28.03 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | EntrezGene:4334431 | ProteinID:ABF99358.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA |
| ProteinID:BAF13479.1 | ProteinID:BAS86858.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009733 | GO:GO:0009734 | GO:GO:0009987 | InterPro:IPR000270 | EnsemblPlantsGene:Os03g0797800 | EnsemblPlants:Os03t0797800-01 |
| InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 | PANTHER:PTHR31734 | PANTHER:PTHR31734:SF14 | UniProt:Q10C19 |
| SUPFAM:SSF54277 | UniParc:UPI0000DB4EE9 | RefSeq:XP_015629948.1 | SEG:seg | : | : |
Description
IAA14AUX/IAA protein family protein. (Os03t0797800-01)
Coordinates
chr3:-:33246011..33247318
Molecular Weight (calculated)
20321.9 Da
IEP (calculated)
8.888
GRAVY (calculated)
-0.328
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMAAESIDA ELRLGLPGSG GGDGVAAKKR RSASSTVKSE ASGTACCGGA GARDVEDGAS PASKVQVVGW PPVGSYRRST FQSSSSSTAA AAKGKGGGET
101: DQGRKNKGGG LYVKVSMDGA PYLRKVDLRM YGGYRELRDA LDALFGCFSA DASASAAHFA VAYEDKDGDL MLAGDVPWDM FISSCKKLRI MRGSEAR
101: DQGRKNKGGG LYVKVSMDGA PYLRKVDLRM YGGYRELRDA LDALFGCFSA DASASAAHFA VAYEDKDGDL MLAGDVPWDM FISSCKKLRI MRGSEAR
001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.