Factsheet for Os05t0559400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0190300-01
Os01t0231000-01
Os01t0236300-01
Os01t0286900-01
Os01t0675700-01
Os01t0741900-01
Os02t0228900-01
Os02t0723400-02
Os03t0633500-01
Os03t0633800-01
Os03t0742900-01
Os03t0797800-01
Os04t0664400-01
Os04t0671900-01
Os05t0230700-01
Os05t0523300-01
Os05t0559400-01
Os06t0335500-01
Os07t0182400-01
Os12t0601300-01
Os12t0601400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G29080.1	Os03t0633500-01	AT1G04250.1	21734647
AT4G29080.1	Os03t0742900-01	AT1G04250.1	21734647
AT4G29080.1	Os12t0601300-01	AT1G04250.1	21734647
AT4G29080.1	Os04t0664400-01	AT1G19850.1	21734647
AT4G29080.1	Os01t0236300-01	AT1G34390.1	21734647
AT4G29080.1	Os01t0190300-01	AT1G51950.1	21734647
AT4G29080.1	Os01t0741900-01	AT1G51950.1	21734647
AT4G29080.1	Os02t0228900-01	AT1G51950.1	21734647
AT4G29080.1	Os05t0523300-01	AT1G51950.1	21734647
AT4G29080.1	Os03t0633500-01	AT3G04730.1	21734647
AT4G29080.1	Os03t0742900-01	AT3G04730.1	21734647
AT4G29080.1	Os12t0601300-01	AT3G04730.1	21734647
AT4G29080.1	Os01t0286900-01	AT3G17600.1	21734647
AT4G29080.1	Os02t0723400-02	AT3G17600.1	21734647
AT4G29080.1	Os01t0286900-01	AT3G62100.1	21734647
AT4G29080.1	Os02t0723400-02	AT3G62100.1	21734647
AT4G29080.1	Os03t0633800-01	AT4G14560.1	21734647
AT4G29080.1	Os03t0797800-01	AT4G14560.1	21734647
AT4G29080.1	Os07t0182400-01	AT4G14560.1	21734647
AT4G29080.1	Os12t0601400-01	AT4G14560.1	21734647
AT4G29080.1	Os03t0633800-01	AT4G14560.1	21798944
AT4G29080.1	Os03t0797800-01	AT4G14560.1	21798944
AT4G29080.1	Os07t0182400-01	AT4G14560.1	21798944
AT4G29080.1	Os12t0601400-01	AT4G14560.1	21798944
AT4G29080.1	Os01t0231000-01	AT4G29080.1	21734647
AT4G29080.1	Os01t0675700-01	AT4G29080.1	21734647
AT4G29080.1	Os05t0230700-01	AT4G29080.1	21734647
AT4G29080.1	Os05t0559400-01	AT4G29080.1	21734647
AT4G29080.1	Os06t0335500-01	AT4G29080.1	21734647
AT4G29080.1	Os04t0671900-01	AT5G37020.1	21734647
AT4G29080.1	Os03t0633800-01	AT5G43700.1	21734647
AT4G29080.1	Os03t0797800-01	AT5G43700.1	21734647
AT4G29080.1	Os07t0182400-01	AT5G43700.1	21734647
AT4G29080.1	Os12t0601400-01	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22521	Sorghum	nucleus	77.22	77.78
TraesCS1A01G390200.1	Wheat	plastid	70.82	76.25
TraesCS1D01G398400.1	Wheat	nucleus	71.17	75.76
Zm00001d009532_P001	Maize	nucleus	74.73	74.73
TraesCS1B01G418400.1	Wheat	nucleus	62.63	71.84
Zm00001d038980_P001	Maize	cytosol, nucleus, plastid	73.67	71.63
Os01t0675700-01	Rice	nucleus	64.77	67.16
HORVU1Hr1G086070.6	Barley	plastid	69.04	61.98
Os05t0230700-01	Rice	nucleus	48.4	52.92
GSMUA_Achr2P15340_001	Banana	nucleus	45.55	52.24
Os06t0335500-01	Rice	nucleus	48.75	51.5
Os01t0231000-01	Rice	nucleus	47.33	50.57
GSMUA_Achr10P...	Banana	nucleus	47.69	45.89
PGSC0003DMT400006548	Potato	plastid	41.64	44.83
KRH74730	Soybean	plastid	25.62	44.72
Solyc03g120500.2.1	Tomato	nucleus	44.13	44.6
PGSC0003DMT400001013	Potato	nucleus	43.42	43.73
KRH23426	Soybean	nucleus	47.69	43.65
VIT_09s0002g04080.t01	Wine grape	nucleus	49.47	43.44
Os12t0601400-01	Rice	nucleus	29.89	42.64
CDY06836	Canola	nucleus	38.08	42.46
KRH09902	Soybean	nucleus	48.04	42.32
Bra011082.1-P	Field mustard	nucleus	43.42	42.07
Os03t0633500-01	Rice	cytosol	34.88	42.06
Solyc12g007230.1.1	Tomato	nucleus	44.13	42.03
VIT_11s0016g03540.t01	Wine grape	nucleus	47.33	41.56
Os03t0742900-01	Rice	vacuole	34.88	41.53
Os01t0178500-02	Rice	nucleus	29.18	41.21
KRH60250	Soybean	nucleus	41.99	41.12
KRH39325	Soybean	nucleus	44.48	40.72
Os03t0797800-01	Rice	nucleus	28.11	40.1
AT4G29080.1	Thale cress	nucleus	43.42	40.0
Os12t0601300-01	Rice	nucleus	39.15	39.71
KRH44313	Soybean	nucleus	44.48	38.82
KRH47242	Soybean	nucleus	43.77	38.56
Os03t0633800-01	Rice	nucleus	30.96	38.5
Os07t0182400-01	Rice	plastid	29.18	37.44
Os05t0178600-01	Rice	nucleus	27.76	36.79
KRH41538	Soybean	golgi, plasma membrane	41.99	33.05

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	EntrezGene:4339588	ProteinID:AAT85102.1	EMBL:AK061439	EMBL:AK099253
EMBL:AK104018	EMBL:AK106181	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	ProteinID:BAF18214.1	ProteinID:BAS95304.1
ProteinID:EEE64666.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009733
GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270	EnsemblPlantsGene:Os05g0559400	EnsemblPlants:Os05t0559400-01	InterPro:PB1_dom
PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF9	UniProt:Q6AT33	SUPFAM:SSF54277
UniParc:UPI0000401B99	RefSeq:XP_015640557.1	SEG:seg	:	:	:

Description

IAA19Similar to IAA11 (Fragment). (Os05t0559400-01);Similar to IAA11 (Fragment). (Os05t0559400-02);Similar to IAA11 (Fragment). (Os05t0559400-03)

Coordinates

chr5:-:27846200..27850391

Molecular Weight (calculated)

29935.2 Da

IEP (calculated)

5.957

GRAVY (calculated)

-0.496

Length

281 amino acids

Sequence
(BLAST)

001: MPPPLEARDY IGLAASPASS SSSCCASTPV AEVVGAHLAL RLGLPGSESP ARAEAEAVVV DAALTLGPAP PPRGGAKRGF VDSLDRSEGR RAAATAGDDE
101: RGVREEEEEE KGLGEAAAGA PRAAKAQVVG WPPVRSYRKN TLAASATKTK GEDQGKSEVG CCYVKVSMDG APYLRKVDLK TYSSYEDLSL ALEKMFSCFI
201: TGRSSSHKTS KRDRLTDGSR ADALKDQEYV LTYEDKDADW MLVGDLPWDL FTTSCRKLRI MRGSDAAGMA PRSLEQTGQN K

Best Arabidopsis Sequence Match ( AT2G22670.4 )
(BLAST)

001: MSSGNDKIKQ VLHIEDLMSY RLLSVDKDEL VTSPCLKERN YLGLSDCSSV DSSTIPNVVG KSNLNFKATE LRLGLPESQS PERETDFGLL SPRTPDEKLL
101: FPLLPSKDNG SATTGHKNVV SGNKRGFADT WDEFSGVKGS VRPGGGINMM LSPKVKDVSK SIQEERSHAK GGLNNAPAAK AQVVGWPPIR SYRKNTMASS
201: TSKNTDEVDG KPGLGVLFVK VSMDGAPYLR KVDLRTYTSY QQLSSALEKM FSCFTLGQCG LHGAQGRERM SEIKLKDLLH GSEFVLTYED KDGDWMLVGD
301: VPWEIFTETC QKLKIMKGSD SIGLAPGAVE KSKNKERV

Arabidopsis Description

IAA8Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:F4IKE6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.