Factsheet for Solyc06g053840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g037530.2.1
Solyc03g031970.2.1
Solyc03g059310.2.1
Solyc03g120380.2.1
Solyc03g121060.2.1
Solyc04g054280.1.1
Solyc04g081240.2.1
Solyc05g009260.1.1
Solyc06g007830.1.1
Solyc06g007840.2.1
Solyc06g008440.1.1
Solyc06g008460.1.1
Solyc06g008470.1.1
Solyc06g008780.1.1
Solyc06g008810.2.1
Solyc06g053840.2.1
Solyc06g084490.1.1
Solyc07g042260.2.1
Solyc08g008380.2.1
Solyc08g082630.2.1
Solyc09g074520.2.1
Solyc09g083280.2.1
Solyc09g083290.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G14560.1	Solyc09g083290.2.1	AT1G04250.1	21734647
AT4G14560.1	Solyc09g083290.2.1	AT1G04250.1	9342315
AT4G14560.1	Solyc07g042260.2.1	AT1G19220.1	9342315
AT4G14560.1	Solyc04g081240.2.1	AT1G19850.1	14729917
AT4G14560.1	Solyc04g081240.2.1	AT1G19850.1	21734647
AT4G14560.1	Solyc04g081240.2.1	AT1G19850.1	9342315
AT4G14560.1	Solyc03g121060.2.1	AT1G51950.1	21798944
AT4G14560.1	Solyc03g120380.2.1	AT3G15540.1	21734647
AT4G14560.1	Solyc03g120380.2.1	AT3G15540.1	9342315
AT4G14560.1	Solyc03g059310.2.1	AT3G18140.1	21798944
AT4G14560.1	Solyc09g083290.2.1	AT3G23050.1	21734647
AT4G14560.1	Solyc05g009260.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g007830.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g007840.2.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008440.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008460.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008470.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008780.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g008810.2.1	AT3G62980.1	15546359
AT4G14560.1	Solyc06g084490.1.1	AT3G62980.1	15546359
AT4G14560.1	Solyc09g074520.2.1	AT3G62980.1	15546359
AT4G14560.1	Solyc04g054280.1.1	AT4G14560.1	14729917
AT4G14560.1	Solyc06g053840.2.1	AT4G14560.1	14729917
AT4G14560.1	Solyc09g083280.2.1	AT4G14560.1	14729917
AT4G14560.1	Solyc04g054280.1.1	AT4G14560.1	21734647
AT4G14560.1	Solyc06g053840.2.1	AT4G14560.1	21734647
AT4G14560.1	Solyc09g083280.2.1	AT4G14560.1	21734647
AT4G14560.1	Solyc04g054280.1.1	AT4G14560.1	21798944
AT4G14560.1	Solyc06g053840.2.1	AT4G14560.1	21798944
AT4G14560.1	Solyc09g083280.2.1	AT4G14560.1	21798944
AT4G14560.1	Solyc04g054280.1.1	AT4G14560.1	9342315
AT4G14560.1	Solyc06g053840.2.1	AT4G14560.1	9342315
AT4G14560.1	Solyc09g083280.2.1	AT4G14560.1	9342315
AT4G14560.1	Solyc08g008380.2.1	AT4G23980.1	21734647
AT4G14560.1	Solyc08g082630.2.1	AT4G23980.1	21734647
AT4G14560.1	Solyc07g042260.2.1	AT5G20730.1	14729917
AT4G14560.1	Solyc07g042260.2.1	AT5G20730.1	9342315
AT4G14560.1	Solyc02g037530.2.1	AT5G37020.1	14729917
AT4G14560.1	Solyc03g031970.2.1	AT5G37020.1	14729917
AT4G14560.1	Solyc04g054280.1.1	AT5G43700.1	21734647
AT4G14560.1	Solyc06g053840.2.1	AT5G43700.1	21734647
AT4G14560.1	Solyc09g083280.2.1	AT5G43700.1	21734647
AT4G14560.1	Solyc04g054280.1.1	AT5G43700.1	9342315
AT4G14560.1	Solyc06g053840.2.1	AT5G43700.1	9342315
AT4G14560.1	Solyc09g083280.2.1	AT5G43700.1	9342315
AT5G43700.1	Solyc07g042260.2.1	AT1G19220.1	21734647
AT5G43700.1	Solyc04g081240.2.1	AT1G19850.1	21734647
AT5G43700.1	Solyc03g121060.2.1	AT1G51950.1	21734647
AT5G43700.1	Solyc03g120380.2.1	AT3G15540.1	21734647
AT5G43700.1	Solyc04g054280.1.1	AT4G14560.1	9342315
AT5G43700.1	Solyc06g053840.2.1	AT4G14560.1	9342315
AT5G43700.1	Solyc09g083280.2.1	AT4G14560.1	9342315
AT5G43700.1	Solyc07g042260.2.1	AT5G20730.1	21734647
AT5G43700.1	Solyc04g054280.1.1	AT5G43700.1	21734647
AT5G43700.1	Solyc06g053840.2.1	AT5G43700.1	21734647
AT5G43700.1	Solyc09g083280.2.1	AT5G43700.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042074	Potato	cytosol, nucleus, plastid	97.37	97.37
Solyc09g083280.2.1	Tomato	nucleus	80.53	78.06
KRH34375	Soybean	cytosol, nucleus	48.95	76.23
AT4G14560.1	Thale cress	nucleus	58.95	66.67
CDY32934	Canola	cytosol, nucleus, plastid	66.32	65.97
CDY36883	Canola	nucleus	59.47	65.7
KRH69048	Soybean	nucleus	66.32	65.62
Bra027504.1-P	Field mustard	nucleus	65.79	65.44
AT5G43700.1	Thale cress	cytosol, extracellular, nucleus	63.68	65.05
Bra032521.1-P	Field mustard	nucleus	61.58	65.0
CDY32536	Canola	cytosol, nucleus, plastid	61.58	65.0
CDY69497	Canola	cytosol, nucleus, plastid	65.26	64.92
CDX94876	Canola	nucleus	58.42	64.91
VIT_05s0020g04680.t01	Wine grape	nucleus	57.37	64.88
CDY10069	Canola	nucleus	62.63	64.67
CDX92972	Canola	nucleus	57.89	64.33
Bra001899.1-P	Field mustard	nucleus	57.89	64.33
CDX89833	Canola	cytosol, nucleus, plastid	62.63	63.98
Bra015297.1-P	Field mustard	cytosol, nucleus, plastid	62.63	63.98
Bra033890.1-P	Field mustard	nucleus	57.89	63.95
CDY53735	Canola	nucleus	57.89	63.95
Solyc04g054280.1.1	Tomato	nucleus	55.79	63.86
CDY35493	Canola	nucleus	57.37	63.74
CDY40837	Canola	nucleus	57.37	63.74
Bra023771.1-P	Field mustard	nucleus	57.37	63.74
CDY10692	Canola	nucleus	57.37	63.37
GSMUA_Achr5P03110_001	Banana	nucleus	55.79	63.1
KRG92430	Soybean	nucleus	64.21	62.89
CDY10346	Canola	nucleus	56.84	62.79
Bra039732.1-P	Field mustard	nucleus	56.32	62.57
GSMUA_Achr9P10690_001	Banana	cytosol, mitochondrion, nucleus	44.74	62.5
CDY18213	Canola	cytosol, nucleus, plastid	60.53	61.83
Solyc09g065850.2.1	Tomato	nucleus	60.0	61.62
Solyc06g084070.2.1	Tomato	nucleus, plastid	50.0	60.9
GSMUA_Achr4P22530_001	Banana	nucleus	56.32	59.12
GSMUA_Achr9P24330_001	Banana	nucleus	52.11	57.89
GSMUA_Achr4P05200_001	Banana	mitochondrion	37.37	56.8
GSMUA_Achr4P21030_001	Banana	nucleus	58.42	56.06
Solyc06g008580.2.1	Tomato	nucleus	55.79	55.79
GSMUA_Achr11P...	Banana	nucleus	50.53	55.17
GSMUA_Achr2P12630_001	Banana	nucleus	58.42	54.68
GSMUA_Achr8P20620_001	Banana	nucleus	53.68	54.26
EER98076	Sorghum	cytosol, mitochondrion, nucleus	53.16	50.75
Os12t0601400-01	Rice	nucleus	52.11	50.25
TraesCS5B01G058800.1	Wheat	cytosol	55.79	49.53
TraesCS5A01G058700.1	Wheat	cytosol	55.26	49.07
TraesCS5D01G069200.1	Wheat	cytosol	55.26	49.07
Zm00001d018973_P001	Maize	nucleus	51.58	48.51
Zm00001d013071_P001	Maize	nucleus	45.26	47.51
TraesCS5D01G449400.1	Wheat	nucleus	44.74	46.96
TraesCS5B01G446100.1	Wheat	cytosol, mitochondrion, nucleus	43.68	46.89
Solyc03g120380.2.1	Tomato	nucleus	47.37	46.88
EER90734	Sorghum	cytosol, nucleus, plastid	44.74	45.7
TraesCS5D01G388200.1	Wheat	nucleus	51.58	45.58
TraesCS5A01G378200.1	Wheat	nucleus	50.53	45.28
EER93778	Sorghum	cytosol, nucleus, plastid	53.68	45.13
Os03t0633800-01	Rice	nucleus	53.16	44.69
Zm00001d041418_P001	Maize	nucleus	53.68	44.35
TraesCS5B01G381800.1	Wheat	nucleus	49.47	44.34
AT3G23030.2	Thale cress	vacuole	60.53	44.06
Os07t0182400-01	Rice	plastid	49.47	42.92
Zm00001d013707_P001	Maize	nucleus	50.53	42.86
Solyc06g008590.2.1	Tomato	nucleus	46.32	42.31
EES16315	Sorghum	cytosol	54.21	42.21
Os03t0797800-01	Rice	nucleus	43.68	42.13
Zm00001d033319_P001	Maize	nucleus	50.0	42.04
AT1G04240.2	Thale cress	cytosol, endoplasmic reticulum, nucleus, plastid	63.68	41.87
Zm00001d030993_P001	Maize	nucleus	43.68	41.71
Solyc09g083290.2.1	Tomato	nucleus	50.0	40.25
Solyc06g053830.2.1	Tomato	nucleus	45.79	39.91
HORVU5Hr1G106350.2	Barley	plastid	44.74	37.78
Solyc01g097290.2.1	Tomato	nucleus	48.95	37.05
HORVU5Hr1G014290.1	Barley	mitochondrion	46.84	34.77
Solyc03g120500.2.1	Tomato	nucleus	50.53	34.53
Solyc12g007230.1.1	Tomato	nucleus	52.63	33.9
HORVU5Hr1G093640.1	Barley	mitochondrion	53.16	32.17
Solyc03g120390.2.1	Tomato	nucleus, plastid	42.63	32.14
Solyc04g076850.2.1	Tomato	nucleus	51.05	27.79
Zm00001d034463_P001	Maize	extracellular, golgi	44.74	26.56

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	InterPro:AUX/IAA_dom	InterPro:AUX_IAA	UniProt:G9HPV5	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009719	GO:GO:0009734	GO:GO:0009987	InterPro:IPR000270
EMBL:JN379434	InterPro:PB1_dom	PFAM:PF02309	PFscan:PS51745	PANTHER:PTHR31734	PANTHER:PTHR31734:SF11
SUPFAM:SSF54277	EnsemblPlantsGene:Solyc06g053840.2	EnsemblPlants:Solyc06g053840.2.1	UniParc:UPI0001D6A8C1	:	:

Description

Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:G9HPV5]

Coordinates

chr6:+:36715476..36716766

Molecular Weight (calculated)

21346.7 Da

IEP (calculated)

6.533

GRAVY (calculated)

-0.579

Length

190 amino acids

Sequence
(BLAST)

001: MECVLAHEKD LNLKATELRL GLPGRTDEES DKEIVFHFKN NKRALPEDED CESNSISDPK TPPVAKTQIV GWPPVRANRK NSFPSKKAEA ECGMYVKVSM
101: DGAPYLRKID LKLYKGYPEL LKALEKMFKL SIGEYSEREG YKGSEFAPAY EDKDGDLMLV GDVPFEMFLS SCKRLRIMKG SEARGLGCGV

Best Arabidopsis Sequence Match ( AT5G43700.1 )
(BLAST)

001: MEKVDVYDEL VNLKATELRL GLPGTEETVS CGKSNKRVLP EATEKEIEST GKTETASPPK AQIVGWPPVR SYRKNNVQTK KSESEGQGNY VKVSMDGAPY
101: LRKIDLTMYK QYPELMKSLE NMFKFSVGEY FEREGYKGSD FVPTYEDKDG DWMLVGDVPW EMFVSSCKRL RIMKGSEVKG LGCGGL

Arabidopsis Description

IAA4Auxin-responsive protein IAA4 [Source:UniProtKB/Swiss-Prot;Acc:P33077]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.