Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05200_001 | Banana | mitochondrion | 48.85 | 68.0 |
| GSMUA_Achr9P24330_001 | Banana | nucleus | 64.37 | 65.5 |
| KRH34375 | Soybean | cytosol, nucleus | 43.68 | 62.3 |
| GSMUA_Achr5P03110_001 | Banana | nucleus | 57.47 | 59.52 |
| GSMUA_Achr9P10690_001 | Banana | cytosol, mitochondrion, nucleus | 45.98 | 58.82 |
| GSMUA_Achr4P22530_001 | Banana | nucleus | 58.62 | 56.35 |
| GSMUA_Achr4P21030_001 | Banana | nucleus | 60.34 | 53.03 |
| GSMUA_Achr8P20620_001 | Banana | nucleus | 56.9 | 52.66 |
| PGSC0003DMT400051896 | Potato | plastid | 45.4 | 51.63 |
| Solyc06g084070.2.1 | Tomato | nucleus, plastid | 45.4 | 50.64 |
| Solyc06g053840.2.1 | Tomato | nucleus | 55.17 | 50.53 |
| PGSC0003DMT400042074 | Potato | cytosol, nucleus, plastid | 55.17 | 50.53 |
| CDY10069 | Canola | nucleus | 52.87 | 50.0 |
| VIT_07s0141g00270.t01 | Wine grape | nucleus | 53.45 | 50.0 |
| GSMUA_Achr2P12630_001 | Banana | nucleus | 58.05 | 49.75 |
| Bra027504.1-P | Field mustard | nucleus | 54.6 | 49.74 |
| CDY32934 | Canola | cytosol, nucleus, plastid | 54.6 | 49.74 |
| CDY69497 | Canola | cytosol, nucleus, plastid | 54.6 | 49.74 |
| CDX94876 | Canola | nucleus | 48.85 | 49.71 |
| AT5G43700.1 | Thale cress | cytosol, extracellular, nucleus | 52.87 | 49.46 |
| CDY32536 | Canola | cytosol, nucleus, plastid | 51.15 | 49.44 |
| Bra033890.1-P | Field mustard | nucleus | 48.85 | 49.42 |
| Bra001899.1-P | Field mustard | nucleus | 48.28 | 49.12 |
| CDY35493 | Canola | nucleus | 48.28 | 49.12 |
| CDX92972 | Canola | nucleus | 48.28 | 49.12 |
| Bra023771.1-P | Field mustard | nucleus | 48.28 | 49.12 |
| KRH71338 | Soybean | nucleus | 56.9 | 49.01 |
| KRG92430 | Soybean | nucleus | 54.6 | 48.97 |
| KRH69048 | Soybean | nucleus | 54.02 | 48.96 |
| Bra032521.1-P | Field mustard | nucleus | 50.57 | 48.89 |
| CDY10692 | Canola | nucleus | 48.28 | 48.84 |
| PGSC0003DMT400049677 | Potato | nucleus | 51.15 | 48.63 |
| CDY40837 | Canola | nucleus | 47.7 | 48.54 |
| CDY10346 | Canola | nucleus | 47.7 | 48.26 |
| AT4G14560.1 | Thale cress | nucleus | 46.55 | 48.21 |
| Solyc04g054280.1.1 | Tomato | nucleus | 45.98 | 48.19 |
| Solyc09g065850.2.1 | Tomato | nucleus | 51.15 | 48.11 |
| Solyc09g083280.2.1 | Tomato | nucleus | 54.02 | 47.96 |
| PGSC0003DMT400015655 | Potato | nucleus | 53.45 | 47.69 |
| CDY18213 | Canola | cytosol, nucleus, plastid | 50.57 | 47.31 |
| CDX89833 | Canola | cytosol, nucleus, plastid | 50.57 | 47.31 |
| Bra015297.1-P | Field mustard | cytosol, nucleus, plastid | 50.57 | 47.31 |
| VIT_14s0030g02310.t01 | Wine grape | nucleus | 54.02 | 47.24 |
| EER98076 | Sorghum | cytosol, mitochondrion, nucleus | 53.45 | 46.73 |
| CDY53735 | Canola | nucleus | 45.98 | 46.51 |
| CDY36883 | Canola | nucleus | 45.98 | 46.51 |
| Zm00001d018973_P001 | Maize | nucleus | 53.45 | 46.04 |
| Os12t0601400-01 | Rice | nucleus | 51.72 | 45.69 |
| Bra039732.1-P | Field mustard | nucleus | 44.83 | 45.61 |
| KRG95613 | Soybean | nucleus | 53.45 | 45.59 |
| PGSC0003DMT400013662 | Potato | cytosol | 49.43 | 45.26 |
| VIT_05s0020g04680.t01 | Wine grape | nucleus | 43.68 | 45.24 |
| KRH67288 | Soybean | nucleus | 53.45 | 45.15 |
| Solyc06g008580.2.1 | Tomato | nucleus | 48.85 | 44.74 |
| KRH32098 | Soybean | nucleus | 43.68 | 43.68 |
| PGSC0003DMT400034978 | Potato | cytosol, mitochondrion, nucleus | 40.8 | 43.29 |
| Zm00001d013071_P001 | Maize | nucleus | 44.25 | 42.54 |
| TraesCS5D01G069200.1 | Wheat | cytosol | 52.3 | 42.52 |
| TraesCS5B01G058800.1 | Wheat | cytosol | 52.3 | 42.52 |
| TraesCS5A01G058700.1 | Wheat | cytosol | 52.3 | 42.52 |
| TraesCS5D01G388200.1 | Wheat | nucleus | 52.3 | 42.33 |
| EER90734 | Sorghum | cytosol, nucleus, plastid | 44.83 | 41.94 |
| TraesCS5A01G378200.1 | Wheat | nucleus | 50.57 | 41.51 |
| TraesCS5B01G381800.1 | Wheat | nucleus | 50.57 | 41.51 |
| TraesCS5B01G446100.1 | Wheat | cytosol, mitochondrion, nucleus | 41.95 | 41.24 |
| TraesCS5D01G449400.1 | Wheat | nucleus | 42.53 | 40.88 |
| Zm00001d041418_P001 | Maize | nucleus | 54.02 | 40.87 |
| EER93778 | Sorghum | cytosol, nucleus, plastid | 52.3 | 40.27 |
| Os03t0633800-01 | Rice | nucleus | 51.15 | 39.38 |
| Zm00001d030993_P001 | Maize | nucleus | 44.83 | 39.2 |
| Os03t0797800-01 | Rice | nucleus | 44.25 | 39.09 |
| Zm00001d033319_P001 | Maize | nucleus | 50.57 | 38.94 |
| Zm00001d013707_P001 | Maize | nucleus | 50.0 | 38.84 |
| Os07t0182400-01 | Rice | plastid | 48.85 | 38.81 |
| EES16315 | Sorghum | cytosol | 54.02 | 38.52 |
| GSMUA_Achr4P21020_001 | Banana | nucleus | 51.72 | 36.29 |
| GSMUA_Achr10P... | Banana | nucleus | 48.28 | 34.85 |
| GSMUA_Achr9P02960_001 | Banana | nucleus | 41.38 | 34.78 |
| GSMUA_Achr2P15340_001 | Banana | nucleus | 48.85 | 34.69 |
| GSMUA_Achr8P20610_001 | Banana | nucleus | 48.28 | 34.43 |
| GSMUA_Achr9P10700_001 | Banana | nucleus | 47.13 | 34.02 |
| GSMUA_Achr2P09210_001 | Banana | nucleus | 48.28 | 33.87 |
| GSMUA_Achr9P25550_001 | Banana | nucleus | 47.13 | 33.74 |
| AT3G23030.2 | Thale cress | vacuole | 49.43 | 32.95 |
| HORVU5Hr1G106350.2 | Barley | plastid | 42.53 | 32.89 |
| GSMUA_AchrUn_... | Banana | nucleus | 40.8 | 32.42 |
| GSMUA_Achr10P... | Banana | nucleus | 51.15 | 32.01 |
| AT1G04240.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus, plastid | 52.3 | 31.49 |
| GSMUA_Achr9P06290_001 | Banana | nucleus | 49.43 | 31.39 |
| GSMUA_Achr7P10930_001 | Banana | nucleus | 47.7 | 31.09 |
| GSMUA_Achr4P22520_001 | Banana | nucleus | 44.83 | 30.83 |
| GSMUA_Achr10P... | Banana | nucleus | 48.85 | 30.58 |
| GSMUA_Achr10P... | Banana | nucleus | 50.57 | 30.14 |
| GSMUA_Achr6P26730_001 | Banana | nucleus | 47.7 | 29.75 |
| HORVU5Hr1G093640.1 | Barley | mitochondrion | 53.45 | 29.62 |
| HORVU5Hr1G014290.1 | Barley | mitochondrion | 43.1 | 29.3 |
| GSMUA_Achr4P08960_001 | Banana | nucleus | 43.1 | 27.57 |
| GSMUA_Achr3P03400_001 | Banana | nucleus | 49.43 | 27.56 |
| Zm00001d034463_P001 | Maize | extracellular, golgi | 44.25 | 24.06 |
| GSMUA_Achr7P13250_001 | Banana | nucleus | 39.08 | 22.9 |
Protein Annotations
| Gene3D:3.10.20.90 | MapMan:35.1 | InterPro:AUX/IAA_dom | InterPro:AUX_IAA | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr11G06690_001 | EnsemblPlants:GSMUA_Achr11P06690_001 |
| EnsemblPlants:GSMUA_Achr11T06690_001 | InterPro:IPR000270 | UniProt:M0RPZ9 | InterPro:PB1_dom | PFAM:PF02309 | PFscan:PS51745 |
| PANTHER:PTHR31734 | PANTHER:PTHR31734:SF8 | SUPFAM:SSF54277 | UniParc:UPI00029570C4 | SEG:seg | : |
Description
Auxin-induced protein 22D [Source:GMGC_GENE;Acc:GSMUA_Achr11G06690_001]
Coordinates
chr11:-:5232961..5233716
Molecular Weight (calculated)
19896.5 Da
IEP (calculated)
4.793
GRAVY (calculated)
-0.772
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDHDNLKAT ELTLGLPGTD AIEKPTTAAP NVNKRSKEEE EEEECLGWPP VRSYRMNSFR ERKMEKKEED TTGIYVKVSM DGAPYLRKVD LGVYNSYEDL
101: TDALEAMFKG FSLGKRIIQR QAHDLHESEH AITYEDKDGD WMLVGDVPWE MFVSSCKRLR IMKGCEARGL TSSP
101: TDALEAMFKG FSLGKRIIQR QAHDLHESEH AITYEDKDGD WMLVGDVPWE MFVSSCKRLR IMKGCEARGL TSSP
001: MDEFVNLKET ELRLGLPGTD NVCEAKERVS CCNNNNKRVL STDTEKEIES SSRKTETSPP RKAQIVGWPP VRSYRKNNIQ SKKNESEHEG QGIYVKVSMD
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
101: GAPYLRKIDL SCYKGYSELL KALEVMFKFS VGEYFERDGY KGSDFVPTYE DKDGDWMLIG DVPWEMFICT CKRLRIMKGS EAKGLGCGV
Arabidopsis Description
SHY2AUX/IAA transcriptional regulator family protein [Source:TAIR;Acc:AT1G04240]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.