Factsheet for HORVU1Hr1G021550.4

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G028170.4
HORVU3Hr1G019750.4
HORVU3Hr1G070620.5
HORVU3Hr1G098530.4
HORVU5Hr1G014290.1
HORVU5Hr1G014300.4
HORVU5Hr1G055840.2
HORVU5Hr1G093580.2
HORVU5Hr1G093640.1
HORVU5Hr1G094220.1
HORVU5Hr1G106350.2
HORVU6Hr1G003170.2
HORVU6Hr1G038010.6

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	HORVU5Hr1G014300.4	AT1G04250.1	11713520
AT3G62980.1	HORVU5Hr1G093580.2	AT1G04250.1	11713520
AT3G62980.1	HORVU5Hr1G094220.1	AT1G04250.1	11713520
AT3G62980.1	HORVU5Hr1G014300.4	AT3G23050.1	11713520
AT3G62980.1	HORVU5Hr1G093580.2	AT3G23050.1	11713520
AT3G62980.1	HORVU5Hr1G094220.1	AT3G23050.1	11713520
AT3G62980.1	HORVU5Hr1G014290.1	AT4G14560.1	15546359
AT3G62980.1	HORVU5Hr1G093640.1	AT4G14560.1	15546359
AT3G62980.1	HORVU5Hr1G106350.2	AT4G14560.1	15546359
AT3G62980.1	HORVU5Hr1G055840.2	AT4G36800.1	12682009
AT3G62980.1	HORVU6Hr1G003170.2	AT4G36800.1	12682009
AT3G62980.1	HORVU6Hr1G038010.6	AT5G63110.1	12445118
AT4G03190.1	HORVU5Hr1G014300.4	AT3G23050.1	15992545
AT4G03190.1	HORVU5Hr1G093580.2	AT3G23050.1	15992545
AT4G03190.1	HORVU5Hr1G094220.1	AT3G23050.1	15992545
AT4G03190.1	HORVU3Hr1G098530.4	AT4G02570.1	15992545
AT4G03190.1	HORVU1Hr1G028170.4	AT5G25890.1	21734647
AT4G03190.1	HORVU3Hr1G019750.4	AT5G25890.1	21734647
AT4G03190.1	HORVU3Hr1G070620.5	AT5G25890.1	21734647

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	87.69	95.59
TraesCS1A01G091300.1	Wheat	cytosol	88.01	95.44
TraesCS1D01G099900.1	Wheat	cytosol	87.69	93.83
Os05t0150500-00	Rice	plastid	80.06	87.56
KXG21312	Sorghum	plastid	78.35	85.11
Zm00001d010863_P001	Maize	plastid	77.1	83.9
GSMUA_Achr5P26930_001	Banana	cytosol	50.78	70.26
Solyc06g008470.1.1	Tomato	extracellular	6.23	70.18
GSMUA_Achr3P23850_001	Banana	cytosol	63.08	69.59
PGSC0003DMT400093216	Potato	mitochondrion	14.95	62.75
Solyc06g008440.1.1	Tomato	extracellular	6.23	62.5
VIT_07s0104g01320.t01	Wine grape	cytosol	54.98	61.28
KRH71533	Soybean	cytosol	54.98	60.34
Solyc09g074520.2.1	Tomato	cytosol	54.52	60.24
KRH31921	Soybean	cytosol	54.83	60.17
PGSC0003DMT400029517	Potato	cytosol	54.36	60.07
KRG96377	Soybean	cytosol	54.83	59.97
PGSC0003DMT400053430	Potato	cytosol	25.08	59.85
KRH68108	Soybean	cytosol	54.36	59.56
VIT_14s0030g01240.t01	Wine grape	cytosol	53.89	59.55
CDY53998	Canola	cytosol	53.89	59.25
CDY68868	Canola	cytosol	49.38	58.7
CDY53774	Canola	cytosol	53.12	58.19
Bra000842.1-P	Field mustard	cytosol	52.96	58.02
Bra034191.1-P	Field mustard	cytosol	52.8	57.95
Bra003518.1-P	Field mustard	cytosol	53.58	57.91
AT3G62980.1	Thale cress	cytosol	53.43	57.74
CDX90899	Canola	cytosol	52.65	57.68
AT4G03190.1	Thale cress	cytosol, plastid	52.49	57.61
PGSC0003DMT400061752	Potato	plastid	51.71	57.24
CDY11468	Canola	cytosol	52.8	56.97
Bra007720.1-P	Field mustard	cytosol	52.8	56.97
CDX76680	Canola	cytosol	52.65	56.81
PGSC0003DMT400056570	Potato	cytosol	52.49	56.73
HORVU2Hr1G070800.1	Barley	cytosol	49.53	55.4
Solyc06g008460.1.1	Tomato	extracellular	20.41	55.27
VIT_12s0035g00130.t01	Wine grape	cytosol, extracellular, nucleus	12.62	55.1
HORVU6Hr1G021040.2	Barley	extracellular	11.84	54.29
Solyc06g008810.2.1	Tomato	cytosol	35.51	54.16
CDY21947	Canola	plastid, vacuole	52.49	53.83
CDX67912	Canola	endoplasmic reticulum, golgi	53.58	53.33
PGSC0003DMT400008765	Potato	cytosol	8.88	53.27
CDY22108	Canola	endoplasmic reticulum, golgi, plastid, vacuole	52.96	53.21
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	11.53	52.86
HORVU5Hr1G075620.2	Barley	cytosol	45.95	51.94
Solyc06g007840.2.1	Tomato	extracellular, plastid	6.23	48.78
CDX89163	Canola	cytosol	47.2	48.4
Bra014378.1-P	Field mustard	cytosol	47.2	48.4
Solyc05g009260.1.1	Tomato	extracellular	5.92	46.91
Solyc06g008780.1.1	Tomato	extracellular	35.98	46.57
HORVU4Hr1G080360.1	Barley	cytosol, peroxisome, plastid	24.14	45.19
HORVU4Hr1G015730.1	Barley	cytosol, peroxisome, plastid	23.36	44.91
HORVU6Hr1G077570.1	Barley	mitochondrion	41.9	42.83
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	7.01	39.47
HORVU4Hr1G078120.4	Barley	cytosol, plastid	39.25	36.95
Solyc06g084490.1.1	Tomato	plastid	10.12	30.95
HORVU4Hr1G060950.3	Barley	cytosol	26.48	29.01
HORVU3Hr1G085210.2	Barley	cytosol	26.79	28.96
HORVU1Hr1G073230.1	Barley	cytosol	26.01	28.26

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	UniProt:A0A287EV48	ncoils:Coil
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU1Hr1G021550
EnsemblPlants:HORVU1Hr1G021550.4	InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PFAM:PF00646
PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383	UniParc:UPI000B465AAF
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:86790779..86795743

Molecular Weight (calculated)

66843.9 Da

IEP (calculated)

6.497

GRAVY (calculated)

0.078

Length

642 amino acids

Sequence
(BLAST)

001: SPGVLLERHL EILGPLLITS SEGCRRWTVL VAQTIXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXW HSLPDEVLEH AFSFLPAAAD RGAAAAVCQG
101: WLGAERRSRR RLAVANCYAA APRDAVDRFP SVRAAEVKGK PHFADFGLVP PAWGAEAAPW VAAAAEGWPL LEELSFKRMV VTDECLEMIA SSFRNFQVLR
201: LVSCEGFSTA GLAAITEGCR NLRELDLQEN YIEDCSNHWL SYFPESFTCL ETLNFSSLEG EVNFAVLERL VSRCRNLKTL KLNNAIPLDK VASLLRKAPQ
301: LVELGTGKFS AEYHSDLFAK LEAVFAGCKS LRRLSGAWDA VPDYLPAFYG VCEGLTSLNL SYATVRGPEL IKFIGRCKNL QQLWVMDLIG DHGLAVVACS
401: CSKLQELRVF PSEPFGAGQV LLTERGLVDV SASCPMLESV LYFCGQMTNE ALITIAKNRP NFTCFRLCIL EPRTPDYVTR QSLDAGFSAI VESCKGLRRL
501: SVSGLLTDLV FKSIGANGNR LEMLSIAFAG NSDLGLHYIL SGCKSLKKLE IRDCPFGNKP LLANAAKLET MRSLWMSSCS LTLGACRQLA EKMPRLTVEI
601: MNDPGRTCPV ESLPDDSPVE TLYVYRTIAG PRSDTPDYVQ IV

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.