Factsheet for Bra007720.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001900.1-P
Bra003735.1-P	nucleus
Bra008231.1-P	nucleus
Bra010575.1-P
Bra011708.1-P
Bra012213.1-P	nucleus, nucleus
Bra012214.1-P	nucleus, nucleus
Bra012216.1-P	nucleus, nucleus
Bra014519.1-P	nucleus
Bra014836.1-P
Bra015298.1-P
Bra015801.1-P	nucleus
Bra017784.1-P
Bra025795.1-P	nucleus, nucleus
Bra030560.1-P
Bra032520.1-P
Bra033886.1-P
Bra035858.1-P
Bra036361.1-P
Bra038607.1-P
Bra039732.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62980.1	Bra015298.1-P	AT1G04250.1	11713520
AT3G62980.1	Bra030560.1-P	AT1G04250.1	11713520
AT3G62980.1	Bra032520.1-P	AT1G04250.1	11713520
AT3G62980.1	Bra012213.1-P	AT1G20140.1	23226441
AT3G62980.1	Bra012214.1-P	AT1G20140.1	23226441
AT3G62980.1	Bra012216.1-P	AT1G20140.1	23226441
AT3G62980.1	Bra025795.1-P	AT1G20140.1	23226441
AT3G62980.1	Bra003735.1-P	AT1G75950.1	10398681
AT3G62980.1	Bra008231.1-P	AT1G75950.1	10398681
AT3G62980.1	Bra015801.1-P	AT1G75950.1	10398681
AT3G62980.1	Bra003735.1-P	AT1G75950.1	12795696
AT3G62980.1	Bra008231.1-P	AT1G75950.1	12795696
AT3G62980.1	Bra015801.1-P	AT1G75950.1	12795696
AT3G62980.1	Bra003735.1-P	AT1G75950.1	23226441
AT3G62980.1	Bra008231.1-P	AT1G75950.1	23226441
AT3G62980.1	Bra015801.1-P	AT1G75950.1	23226441
AT3G62980.1	Bra012213.1-P	AT2G25700.1	23226441
AT3G62980.1	Bra012214.1-P	AT2G25700.1	23226441
AT3G62980.1	Bra012216.1-P	AT2G25700.1	23226441
AT3G62980.1	Bra025795.1-P	AT2G25700.1	23226441
AT3G62980.1	Bra014519.1-P	AT3G21850.1	12795696
AT3G62980.1	Bra014519.1-P	AT3G21850.1	23226441
AT3G62980.1	Bra001900.1-P	AT3G23050.1	11713520
AT3G62980.1	Bra033886.1-P	AT3G23050.1	11713520
AT3G62980.1	Bra039732.1-P	AT4G14560.1	15546359
AT3G62980.1	Bra010575.1-P	AT4G36800.1	12682009
AT3G62980.1	Bra011708.1-P	AT4G36800.1	12682009
AT3G62980.1	Bra014836.1-P	AT4G36800.1	12682009
AT3G62980.1	Bra017784.1-P	AT4G36800.1	12682009
AT3G62980.1	Bra036361.1-P	AT4G36800.1	12682009
AT3G62980.1	Bra035858.1-P	AT5G63110.1	12445118
AT3G62980.1	Bra038607.1-P	AT5G63110.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11468	Canola	cytosol	99.5	99.5
AT3G62980.1	Thale cress	cytosol	92.61	92.76
Bra003518.1-P	Field mustard	cytosol	91.26	91.41
Bra014378.1-P	Field mustard	cytosol	85.21	80.99
VIT_07s0104g01320.t01	Wine grape	cytosol	77.31	79.86
KRH31921	Soybean	cytosol	77.65	78.97
KRH71533	Soybean	cytosol	77.65	78.97
KRH68108	Soybean	cytosol	76.81	77.99
Solyc09g074520.2.1	Tomato	cytosol	76.13	77.97
PGSC0003DMT400029517	Potato	cytosol	75.63	77.45
Solyc06g008470.1.1	Tomato	extracellular	7.39	77.19
KRG96377	Soybean	cytosol	75.97	77.0
Solyc06g008440.1.1	Tomato	extracellular	8.24	76.56
PGSC0003DMT400053430	Potato	cytosol	33.95	75.09
PGSC0003DMT400061752	Potato	plastid	71.26	73.1
PGSC0003DMT400056570	Potato	cytosol	72.44	72.56
PGSC0003DMT400093216	Potato	mitochondrion	18.66	72.55
Solyc06g008810.2.1	Tomato	cytosol	48.57	68.65
Bra034191.1-P	Field mustard	cytosol	67.39	68.55
PGSC0003DMT400013682	Potato	cytosol, mitochondrion	15.97	67.86
Bra000842.1-P	Field mustard	cytosol	66.55	67.58
Solyc06g008460.1.1	Tomato	extracellular	26.89	67.51
GSMUA_Achr5P26930_001	Banana	cytosol	52.1	66.81
GSMUA_Achr3P23850_001	Banana	cytosol	62.52	63.92
PGSC0003DMT400008765	Potato	cytosol	11.09	61.68
Bra032954.1-P	Field mustard	cytosol	58.15	60.17
Os05t0150500-00	Rice	plastid	58.15	58.94
KXG21312	Sorghum	plastid	58.32	58.71
Zm00001d010863_P001	Maize	plastid	58.15	58.64
TraesCS1A01G091300.1	Wheat	cytosol	57.82	58.11
TraesCS1B01G119100.1	Wheat	cytosol, peroxisome, plastid	57.48	58.06
Bra016754.1-P	Field mustard	cytosol	57.48	57.97
Bra026953.1-P	Field mustard	cytosol	55.97	57.61
Solyc06g008780.1.1	Tomato	extracellular	47.9	57.46
TraesCS1D01G099900.1	Wheat	cytosol	57.65	57.17
Solyc06g007840.2.1	Tomato	extracellular, plastid	7.56	54.88
Solyc05g009260.1.1	Tomato	extracellular	7.23	53.09
HORVU1Hr1G021550.4	Barley	cytosol	56.97	52.8
Solyc06g007830.1.1	Tomato	endoplasmic reticulum, extracellular	9.24	48.25
Bra000604.1-P	Field mustard	cytosol, plastid	47.23	46.29
Bra013798.1-P	Field mustard	cytosol	45.55	44.65
Solyc06g084490.1.1	Tomato	plastid	14.12	40.0
Bra000156.1-P	Field mustard	cytosol	30.92	31.19
Bra005000.1-P	Field mustard	cytosol	31.43	31.01
Bra017044.1-P	Field mustard	cytosol	29.41	28.97
Bra017045.1-P	Field mustard	cytosol	29.08	28.5

Protein Annotations

Gene3D:1.20.1280.50	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	Gene3D:3.80.10.10	EnsemblPlantsGene:Bra007720	EnsemblPlants:Bra007720.1
EnsemblPlants:Bra007720.1-P	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	UniProt:M4CU26	PFAM:PF12937
PANTHER:PTHR43944	PANTHER:PTHR43944:SF7	SMART:SM00256	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0002542B98	:	:	:	:	:

Description

AT3G62980 (E=0.0) TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase

Coordinates

chrA09:-:30524334..30526651

Molecular Weight (calculated)

66845.2 Da

IEP (calculated)

7.482

GRAVY (calculated)

0.008

Length

595 amino acids

Sequence
(BLAST)

001: MYKRVALSFP EEVLEHVFSF IHVDKDRNSV SLVCKSWYEI ERWCRRRVFI GNCYAVSPAA VIRRFPKARS VELKGKPHFA DFNLVPEGWG GYVYPWIEAM
101: SASYTWLEEI RVKRMVVSDE CLELIAKSFK NFKVLVLSSC DGFSTDGLAA IASSCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLVSEVSF
201: SALERLVCRS PNLKSLKLNR AVPLEKLAAL LQRAPQLEEF GTGVYSAEVR PDVLSGLSVA ISGCKKLKWL SGFWDALPAY LPAVYSVCSG LTTLNLSYAT
301: VQSYDLVKLL SQCPKLQRLW VLDYIEDDGL EMLALTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSAG CPKLESVLYF CRQMTNAALV TIARNRPNMT
401: RFRLCIIEPK APDHMTLEPL DVGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC ESLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGPPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQQH SATRFSRQII TTNGL

Best Arabidopsis Sequence Match ( AT3G62980.1 )
(BLAST)

001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL

Arabidopsis Description

TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.