Factsheet for Bra000604.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83172	Canola	cytosol, plastid	99.51	99.51
AT5G49980.1	Thale cress	nucleus	91.27	89.5
Bra013798.1-P	Field mustard	cytosol	77.1	77.1
VIT_18s0001g07120.t01	Wine grape	cytosol	71.0	72.56
PGSC0003DMT400005419	Potato	cytosol	68.37	67.7
KRH72427	Soybean	cytosol	69.69	67.14
Solyc04g074980.2.1	Tomato	cytosol	68.7	66.93
KRH16819	Soybean	cytosol	68.86	65.31
KRH62206	Soybean	cytosol	62.6	65.18
Os03t0187500-01	Rice	cytosol	27.02	65.08
KRH52925	Soybean	cytosol	62.11	64.22
HORVU4Hr1G080360.1	Barley	cytosol, peroxisome, plastid	35.42	62.68
HORVU4Hr1G015730.1	Barley	cytosol, peroxisome, plastid	34.1	61.98
GSMUA_Achr3P06710_001	Banana	cytosol	57.83	61.26
GSMUA_Achr5P05520_001	Banana	cytosol	58.81	60.82
GSMUA_Achr7P11780_001	Banana	cytosol	57.33	58.98
TraesCS7D01G177500.1	Wheat	cytosol, plastid	60.3	58.19
TraesCS7A01G176200.1	Wheat	cytosol	59.8	58.17
TraesCS7B01G081200.1	Wheat	cytosol	59.8	58.08
Os02t0759700-01	Rice	cytosol	60.63	57.77
HORVU6Hr1G077570.1	Barley	mitochondrion	58.98	57.01
TraesCS6B01G345800.1	Wheat	plastid	59.97	56.43
TraesCS4D01G301800.1	Wheat	cytosol, nucleus, peroxisome	56.67	56.39
TraesCS6A01G315300.1	Wheat	plastid	59.97	56.26
TraesCS6D01G294600.1	Wheat	plastid	59.97	56.17
TraesCS4A01G001800.1	Wheat	cytosol	56.18	56.09
EES05842	Sorghum	plastid	60.96	55.89
Zm00001d052188_P001	Maize	plastid	60.63	55.26
Zm00001d018126_P001	Maize	plastid	60.46	55.19
Zm00001d027975_P001	Maize	cytosol	53.71	54.52
EER92735	Sorghum	cytosol	53.87	54.32
Zm00001d048233_P001	Maize	cytosol	52.55	53.34
Bra032954.1-P	Field mustard	cytosol	49.75	52.52
Bra026953.1-P	Field mustard	cytosol	48.76	51.21
HORVU4Hr1G078120.4	Barley	cytosol, plastid	55.85	49.71
Bra016754.1-P	Field mustard	cytosol	48.11	49.49
Bra003518.1-P	Field mustard	cytosol	47.12	48.15
Bra034191.1-P	Field mustard	cytosol	46.13	47.86
Bra000842.1-P	Field mustard	cytosol	45.96	47.61
Bra007720.1-P	Field mustard	cytosol	46.29	47.23
Bra014378.1-P	Field mustard	cytosol	42.5	41.21
Bra000156.1-P	Field mustard	cytosol	29.16	30.0
Bra005000.1-P	Field mustard	cytosol	29.49	29.68
Bra017044.1-P	Field mustard	cytosol	27.68	27.81
Bra017045.1-P	Field mustard	cytosol	27.18	27.18

Protein Annotations

EnsemblPlants:Bra000604.1	EnsemblPlants:Bra000604.1-P	EnsemblPlantsGene:Bra000604	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR43944	PANTHER:PTHR43944:SF8	SEG:seg	SMART:SM00367	SUPFAM:SSF52047	SUPFAM:SSF81383
UniParc:UPI0002540195	UniProt:M4C8S6	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:	:

Description

AT5G49980 (E=0.0) AFB5 | AFB5 (Auxin F-Box protein 5); ubiquitin-protein ligase

Coordinates

chrA03:-:12011058..12013060

Molecular Weight (calculated)

67956.0 Da

IEP (calculated)

5.465

GRAVY (calculated)

-0.101

Length

607 amino acids

Sequence
(BLAST)

001: MPEDDEDQSP PSDLRSQPPC SPNKSRNCIS SSSSQTFPDH VLENVLENVL QFLDSRCDRN AASLVCKLWW KVEGLTRSEV FIGNCYALSP ARLTQRFKRV
101: RSLLLKGKPR FADFNLMPPD WGANFAPWVS TMAKAYPWLE KVDLKRMFVT DDDLALLAES FPGFKELVLV CCEGFGTSGI AVVANKCRKL KVLDLIESEV
201: TDDEVDWVSC FPEDVTCLES LAFDCVEAPI NFKALEGLVG RSPSLRKLRL NRFVSLEELR RLLLLGAPQL TSLGTGSFSR GDQSDEQGPP DYAAAFRACK
301: SVVCLSGFRE LMPEYLPAIL PVCANLTSLN FSYANISPDM FKPIIHSCHK LQIFWALDSI CDEGLQAVAA TCKELRELRI FPFDPREDSE GPVSELGLQA
401: ISEGCRKLES LLYFCQRMTN AALIAMSHNC PELTVFRLCI MGRHRPDHVT GKAMDEGFGA IVKNCKKLTR LAVSGLLTDQ AFRYMGEYGK LIRTLSVAFA
501: GDSDMALRHV LEGCPRLQKL EIRDSPFGDV ALRSGMHRYY NMRFVWMSAC SLSMGCCKDV ARAMPNLVVE VIGSDDDDEN REFVDTLYMY RSLDGPRKDA
601: PQFVTIL

Best Arabidopsis Sequence Match ( AT5G49980.1 )
(BLAST)

001: MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL

Arabidopsis Description

AFB5AFB5 [Source:UniProtKB/TrEMBL;Acc:A0A178UB83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.