Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G301800.1 | Wheat | cytosol, nucleus, peroxisome | 98.36 | 98.03 |
| Os03t0187500-01 | Rice | cytosol | 36.84 | 88.89 |
| HORVU4Hr1G078120.4 | Barley | cytosol, plastid | 96.71 | 86.22 |
| EER92735 | Sorghum | cytosol | 79.11 | 79.9 |
| Zm00001d027975_P001 | Maize | cytosol | 77.96 | 79.26 |
| Zm00001d048233_P001 | Maize | cytosol | 77.8 | 79.1 |
| VIT_18s0001g07120.t01 | Wine grape | cytosol | 58.22 | 59.6 |
| GSMUA_Achr7P11780_001 | Banana | cytosol | 55.92 | 57.63 |
| PGSC0003DMT400005419 | Potato | cytosol | 57.4 | 56.93 |
| KRH52925 | Soybean | cytosol | 54.93 | 56.9 |
| CDY21439 | Canola | cytosol | 56.41 | 56.79 |
| KRH62206 | Soybean | cytosol | 54.44 | 56.78 |
| Solyc04g074980.2.1 | Tomato | cytosol | 57.57 | 56.18 |
| Bra000604.1-P | Field mustard | cytosol, plastid | 56.09 | 56.18 |
| CDX83172 | Canola | cytosol, plastid | 55.76 | 55.85 |
| KRH72427 | Soybean | cytosol | 57.4 | 55.4 |
| AT5G49980.1 | Thale cress | nucleus | 56.09 | 55.09 |
| CDY03450 | Canola | cytosol | 54.77 | 54.59 |
| TraesCS7A01G176200.1 | Wheat | cytosol | 55.92 | 54.49 |
| Bra013798.1-P | Field mustard | cytosol | 54.28 | 54.37 |
| CDY34286 | Canola | cytosol | 54.44 | 54.35 |
| KRH16819 | Soybean | cytosol | 56.58 | 53.75 |
| TraesCS6A01G315300.1 | Wheat | plastid | 56.91 | 53.48 |
| AT4G24390.1 | Thale cress | cytosol, plastid | 54.77 | 53.45 |
| TraesCS5A01G281100.1 | Wheat | cytosol | 43.59 | 46.57 |
| TraesCS2A01G286200.1 | Wheat | cytosol | 43.09 | 45.64 |
| TraesCS1A01G091300.1 | Wheat | cytosol | 42.76 | 43.92 |
| TraesCS3A01G367500.1 | Wheat | cytosol | 30.76 | 33.57 |
| TraesCS1A01G279100.1 | Wheat | cytosol | 29.93 | 30.74 |
| TraesCS4A01G091200.1 | Wheat | cytosol | 29.44 | 30.55 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G001800.1 | EnsemblPlantsGene:TraesCS4A01G001800 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR43944 | PANTHER:PTHR43944:SF4 | SEG:seg | SMART:SM00367 | SUPFAM:SSF52047 |
| MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:1725724..1727753
Molecular Weight (calculated)
66884.4 Da
IEP (calculated)
5.913
GRAVY (calculated)
-0.076
Length
608 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEEDEDQAA GAPPKRPRAA SPPPPPPPDQ VLDNVLETVL QFLRAPGDRG AASLVCRSWH RAESATRASV AVRNILAASP ARAARRFPNA HHILLKGRPR
101: FADFNLLPPG WAASAFRPWA AALAAAAFPA LRSLSLKRIT VTDDDLDLLA RSLPPSFREL SLLLCDGFSS RGLASLASHC RGLRVLDVVD CELNEEEDDE
201: VSDWVAAFPR GHTDLESLSF ECFTPQVPFA ALEALVARSP RLRRLRINQH VSLGQLRRLM ALMPRLTHLG TGSFRPGDGA EDEGLDFGQM LTAFASAGRA
301: NSLVSLSGFR DLAPEYLPTI ATVAANLTSM DLSYAPVNPD QVLLFIGQCR SLETLWVLDS VRDEGLQAVA MYCKKLQVLR VLPLDAHEDA DELVSEVGLT
401: AISEGCRDLR SILYFCQRMT NAAVITMSQN CPEMKVFRLC IMGRHRPDHV TGEPMDEGFG AIVRNCSKLT RLSTSGHLTD RAFEYIGNYG SSLRTLSVAF
501: AGDSDLALQH ILQGCSKLEK LEIRDCPFGD AGLLSGMHHF YNMRFVWMSG CSLTLQGCEE VARQLPRMVV ELINSQPEME KTDGVDILYM YRSLEGPRED
601: VPPFVKIL
101: FADFNLLPPG WAASAFRPWA AALAAAAFPA LRSLSLKRIT VTDDDLDLLA RSLPPSFREL SLLLCDGFSS RGLASLASHC RGLRVLDVVD CELNEEEDDE
201: VSDWVAAFPR GHTDLESLSF ECFTPQVPFA ALEALVARSP RLRRLRINQH VSLGQLRRLM ALMPRLTHLG TGSFRPGDGA EDEGLDFGQM LTAFASAGRA
301: NSLVSLSGFR DLAPEYLPTI ATVAANLTSM DLSYAPVNPD QVLLFIGQCR SLETLWVLDS VRDEGLQAVA MYCKKLQVLR VLPLDAHEDA DELVSEVGLT
401: AISEGCRDLR SILYFCQRMT NAAVITMSQN CPEMKVFRLC IMGRHRPDHV TGEPMDEGFG AIVRNCSKLT RLSTSGHLTD RAFEYIGNYG SSLRTLSVAF
501: AGDSDLALQH ILQGCSKLEK LEIRDCPFGD AGLLSGMHHF YNMRFVWMSG CSLTLQGCEE VARQLPRMVV ELINSQPEME KTDGVDILYM YRSLEGPRED
601: VPPFVKIL
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.