Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G001800.1 | Wheat | cytosol | 88.89 | 36.84 |
| TraesCS4D01G301800.1 | Wheat | cytosol, nucleus, peroxisome | 88.89 | 36.72 |
| EER92735 | Sorghum | cytosol | 85.32 | 35.71 |
| Zm00001d027975_P001 | Maize | cytosol | 83.33 | 35.12 |
| Zm00001d048233_P001 | Maize | cytosol | 82.54 | 34.78 |
| HORVU4Hr1G078120.4 | Barley | cytosol, plastid | 88.1 | 32.55 |
| GSMUA_Achr7P11780_001 | Banana | cytosol | 68.65 | 29.32 |
| VIT_18s0001g07120.t01 | Wine grape | cytosol | 69.05 | 29.29 |
| Solyc04g074980.2.1 | Tomato | cytosol | 70.24 | 28.41 |
| PGSC0003DMT400005419 | Potato | cytosol | 69.05 | 28.39 |
| KRH62206 | Soybean | cytosol | 65.08 | 28.13 |
| KRH52925 | Soybean | cytosol | 65.48 | 28.11 |
| CDY21439 | Canola | cytosol | 65.48 | 27.32 |
| Bra000604.1-P | Field mustard | cytosol, plastid | 65.08 | 27.02 |
| CDX83172 | Canola | cytosol, plastid | 64.68 | 26.85 |
| KRH72427 | Soybean | cytosol | 66.67 | 26.67 |
| AT5G49980.1 | Thale cress | nucleus | 65.08 | 26.49 |
| KRH16819 | Soybean | cytosol | 65.87 | 25.94 |
| Bra013798.1-P | Field mustard | cytosol | 61.51 | 25.54 |
| CDY34286 | Canola | cytosol | 61.51 | 25.45 |
| CDY03450 | Canola | cytosol | 61.51 | 25.41 |
| AT4G24390.1 | Thale cress | cytosol, plastid | 61.9 | 25.04 |
| Os02t0759700-01 | Rice | cytosol | 62.7 | 24.8 |
| Os04t0395600-01 | Rice | cytosol | 52.38 | 22.96 |
| Os11t0515500-01 | Rice | cytosol | 49.6 | 22.01 |
| Os05t0150500-00 | Rice | plastid | 47.62 | 20.44 |
| Os03t0265500-01 | Rice | plasma membrane | 33.73 | 14.43 |
| Os01t0853400-01 | Rice | cytosol | 32.14 | 13.61 |
| Os05t0449500-01 | Rice | cytosol | 32.14 | 13.57 |
Protein Annotations
| EnsemblPlants:Os03t0187500-01 | EnsemblPlantsGene:Os03g0187500 | Gene3D:3.80.10.10 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp |
| PANTHER:PTHR43944 | PANTHER:PTHR43944:SF4 | ProteinID:BAF11124.1 | ProteinID:BAS82688.1 | ProteinID:BAS82689.1 | SMART:SM00367 |
| SUPFAM:SSF52047 | UniParc:UPI0000E11F67 | UniProt:Q0DUG4 | MapMan:35.1 | : | : |
Description
Os_F0701Leucine-rich repeat, cysteine-containing subtype containing protein. (Os03t0187500-01);Similar to Leucine Rich Repeat family protein, expressed. (Os03t0187500-02)
Coordinates
chr3:-:4584427..4585587
Molecular Weight (calculated)
28049.0 Da
IEP (calculated)
6.841
GRAVY (calculated)
-0.057
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: VLDSVRDEGL QATARTCKKL QVLHVLPLNA LEDADELVSE VGLTAIAEGC RGLRSTLYFC QSMTNAAVIA ISQNCVDLKV FRLCIMGRHQ PDHVTGEPMD
101: EGFGAIVRNC SKLTRLSTSG HLTDRAFEYI GKYAKSLRTL SVAFAGDSNL ALQHILQGCS KLEKLEIRDC PFGDAGLLSG MHHFYNMRFL WMSGCNLTLQ
201: GCKEVARRLP RLVVELINSQ PENERTDSVD ILYMYRSLEG PREDVPPFVK IL
101: EGFGAIVRNC SKLTRLSTSG HLTDRAFEYI GKYAKSLRTL SVAFAGDSNL ALQHILQGCS KLEKLEIRDC PFGDAGLLSG MHHFYNMRFL WMSGCNLTLQ
201: GCKEVARRLP RLVVELINSQ PENERTDSVD ILYMYRSLEG PREDVPPFVK IL
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.