Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21439 | Canola | cytosol | 89.18 | 91.39 |
| Bra000604.1-P | Field mustard | cytosol, plastid | 89.5 | 91.27 |
| CDX83172 | Canola | cytosol, plastid | 89.5 | 91.27 |
| AT4G24390.1 | Thale cress | cytosol, plastid | 79.0 | 78.49 |
| VIT_18s0001g07120.t01 | Wine grape | cytosol | 70.6 | 73.57 |
| KRH72427 | Soybean | cytosol | 70.6 | 69.37 |
| PGSC0003DMT400005419 | Potato | cytosol | 67.85 | 68.52 |
| Solyc04g074980.2.1 | Tomato | cytosol | 68.82 | 68.38 |
| KRH62206 | Soybean | cytosol | 63.33 | 67.24 |
| KRH16819 | Soybean | cytosol | 69.47 | 67.19 |
| KRH52925 | Soybean | cytosol | 62.68 | 66.1 |
| Os03t0187500-01 | Rice | cytosol | 26.49 | 65.08 |
| HORVU4Hr1G080360.1 | Barley | cytosol, peroxisome, plastid | 35.06 | 63.27 |
| GSMUA_Achr3P06710_001 | Banana | cytosol | 57.19 | 61.78 |
| HORVU4Hr1G015730.1 | Barley | cytosol, peroxisome, plastid | 32.96 | 61.08 |
| GSMUA_Achr5P05520_001 | Banana | cytosol | 57.35 | 60.48 |
| GSMUA_Achr7P11780_001 | Banana | cytosol | 56.87 | 59.66 |
| Os02t0759700-01 | Rice | cytosol | 60.58 | 58.87 |
| TraesCS7D01G177500.1 | Wheat | cytosol, plastid | 59.13 | 58.19 |
| TraesCS7A01G176200.1 | Wheat | cytosol | 58.64 | 58.17 |
| TraesCS7B01G081200.1 | Wheat | cytosol | 58.64 | 58.08 |
| HORVU6Hr1G077570.1 | Barley | mitochondrion | 58.48 | 57.64 |
| TraesCS6B01G345800.1 | Wheat | plastid | 59.77 | 57.36 |
| TraesCS6A01G315300.1 | Wheat | plastid | 59.77 | 57.19 |
| TraesCS6D01G294600.1 | Wheat | plastid | 59.77 | 57.1 |
| EES05842 | Sorghum | plastid | 60.26 | 56.34 |
| TraesCS4D01G301800.1 | Wheat | cytosol, nucleus, peroxisome | 55.41 | 56.23 |
| TraesCS4A01G001800.1 | Wheat | cytosol | 55.09 | 56.09 |
| Zm00001d052188_P001 | Maize | plastid | 60.1 | 55.86 |
| Zm00001d018126_P001 | Maize | plastid | 59.77 | 55.64 |
| EER92735 | Sorghum | cytosol | 52.18 | 53.65 |
| Zm00001d027975_P001 | Maize | cytosol | 51.7 | 53.51 |
| Zm00001d048233_P001 | Maize | cytosol | 51.7 | 53.51 |
| AT1G12820.1 | Thale cress | cytosol | 47.98 | 51.47 |
| AT3G26810.1 | Thale cress | cytosol | 47.66 | 51.3 |
| HORVU4Hr1G078120.4 | Barley | cytosol, plastid | 54.77 | 49.71 |
| AT4G03190.1 | Thale cress | cytosol, plastid | 46.04 | 48.72 |
| AT3G62980.1 | Thale cress | cytosol | 46.04 | 47.98 |
| AT2G39940.1 | Thale cress | cytosol | 29.56 | 30.91 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | Gene3D:3.80.10.10 | EntrezGene:835062 | UniProt:A0A178UB83 |
| ProteinID:AED95880.1 | Symbol:AFB5 | EMBL:AK221208 | ArrayExpress:AT5G49980 | EnsemblPlantsGene:AT5G49980 | RefSeq:AT5G49980 |
| TAIR:AT5G49980 | RefSeq:AT5G49980-TAIR-G | EnsemblPlants:AT5G49980.1 | TAIR:AT5G49980.1 | EMBL:AY056431 | EMBL:AY139774 |
| Unigene:At.22898 | ProteinID:BAA97019.1 | EMBL:BT004536 | InterPro:F-box-like_dom_sf | GO:GO:0000822 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009719 |
| GO:GO:0009734 | GO:GO:0009987 | GO:GO:0010011 | GO:GO:0016567 | GO:GO:0019005 | GO:GO:0019538 |
| InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt_Cys-con_subtyp | RefSeq:NP_568718.1 | ProteinID:OAO91033.1 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR43944 |
| PANTHER:PTHR43944:SF8 | UniProt:Q9LTX2 | SMART:SM00367 | SUPFAM:SSF52047 | SUPFAM:SSF81383 | UniParc:UPI000000C398 |
| SEG:seg | : | : | : | : | : |
Description
AFB5AFB5 [Source:UniProtKB/TrEMBL;Acc:A0A178UB83]
Coordinates
chr5:-:20333897..20336671
Molecular Weight (calculated)
69320.3 Da
IEP (calculated)
4.918
GRAVY (calculated)
-0.113
Length
619 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.