Factsheet for HORVU6Hr1G077570.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
Predotar:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24390.1	HORVU0Hr1G001280.1	AT2G41090.1	17360592
AT4G24390.1	HORVU2Hr1G016740.4	AT2G41090.1	17360592
AT4G24390.1	HORVU3Hr1G038010.1	AT2G41090.1	17360592
AT4G24390.1	HORVU3Hr1G079210.4	AT2G41090.1	17360592
AT4G24390.1	HORVU4Hr1G026290.3	AT2G41090.1	17360592
AT4G24390.1	HORVU5Hr1G014060.1	AT2G41090.1	17360592
AT4G24390.1	HORVU5Hr1G014070.2	AT2G41090.1	17360592
AT4G24390.1	HORVU5Hr1G044710.4	AT2G41090.1	17360592
AT4G24390.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT4G24390.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT4G24390.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT4G24390.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT4G24390.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT4G24390.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT4G24390.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT4G24390.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
AT4G24390.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
AT4G24390.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
AT4G24390.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
AT4G24390.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
AT4G24390.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
AT4G24390.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
AT4G24390.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
AT4G24390.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G080360.1	Barley	cytosol, peroxisome, plastid	52.87	96.79
HORVU4Hr1G015730.1	Barley	cytosol, peroxisome, plastid	50.8	95.51
TraesCS6B01G345800.1	Wheat	plastid	93.15	90.7
TraesCS6A01G315300.1	Wheat	plastid	93.31	90.57
TraesCS6D01G294600.1	Wheat	plastid	93.15	90.28
Os02t0759700-01	Rice	cytosol	84.87	83.67
EES05842	Sorghum	plastid	82.17	77.95
Zm00001d052188_P001	Maize	plastid	81.37	76.73
Zm00001d018126_P001	Maize	plastid	80.89	76.39
GSMUA_Achr3P06710_001	Banana	cytosol	61.94	67.89
GSMUA_Achr5P05520_001	Banana	cytosol	61.47	65.76
VIT_18s0001g07120.t01	Wine grape	cytosol	61.94	65.49
KRH62206	Soybean	cytosol	58.6	63.12
KRH52925	Soybean	cytosol	58.12	62.18
CDY03450	Canola	cytosol	58.12	59.84
PGSC0003DMT400005419	Potato	cytosol	58.28	59.71
Bra013798.1-P	Field mustard	cytosol	57.64	59.64
CDY34286	Canola	cytosol	57.64	59.44
KRH72427	Soybean	cytosol	59.39	59.21
Solyc04g074980.2.1	Tomato	cytosol	58.6	59.07
Bra000604.1-P	Field mustard	cytosol, plastid	57.01	58.98
AT4G24390.1	Thale cress	cytosol, plastid	58.44	58.91
CDY21439	Canola	cytosol	56.53	58.77
CDX83172	Canola	cytosol, plastid	56.69	58.65
AT5G49980.1	Thale cress	nucleus	57.64	58.48
KRH16819	Soybean	cytosol	59.55	58.44
HORVU4Hr1G078120.4	Barley	cytosol, plastid	55.1	50.73
HORVU6Hr1G021040.2	Barley	extracellular	11.31	50.71
HORVU2Hr1G070800.1	Barley	cytosol	44.59	48.78
HORVU5Hr1G075620.2	Barley	cytosol	43.79	48.42
HORVU1Hr1G021550.4	Barley	cytosol	42.83	41.9
HORVU4Hr1G060950.3	Barley	cytosol	27.71	29.69
HORVU3Hr1G085210.2	Barley	cytosol	27.87	29.46
HORVU1Hr1G073230.1	Barley	cytosol	27.23	28.93

Protein Annotations

EnsemblPlants:HORVU6Hr1G077570.1	EnsemblPlantsGene:HORVU6Hr1G077570	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf
InterPro:Leu-rich_rpt_Cys-con_subtyp	ncoils:Coil	PANTHER:PTHR43944	PANTHER:PTHR43944:SF8	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI000B48565A	UniProt:A0A287USQ7	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:

Description

No Description!

Coordinates

chrchr6H:-:530990733..530993971

Molecular Weight (calculated)

69367.5 Da

IEP (calculated)

7.761

GRAVY (calculated)

-0.100

Length

628 amino acids

Sequence
(BLAST)

001: MRRRRRTPPA RRRRGCRRTT TADDGDGGGG AAGGGDRWAP DLRGGCGSNG NGGRWAPPDQ VLENVLESVL EFLTAARDRN AASLVCRSWY RAEAQTRREL
101: FIGNCYAVSP RRAVERFGGV RAVVLKGKPR FADFSLVPHG WGAKVSPWVA ALGPAYPRLE RICLKRMTVS DDELALIPKS FPLFKDLSLV CCDGFTTRGL
201: AVIAEGCRHL RVLDLTEDYF HEEESEVVDW ISKFPECNTS IESLVFDCVS VPFNFEALEA LVARSPALRR LRVNDHVSIE QLRRLMARAP HLTHLGTGSF
301: RSEPGPGGAL SVSELAASFA ASRSLVCLSG FLDVNGAYLP AIYQVCPNLT SLNFSFAALT AEEFIPVIRH CINLRTLWVL DTVGDEGLRA VAETCSNLRE
401: LRVFPLDATE DSEGSVSDIG LQAISEGCRK LESILYFCQR MTNAAVVAMS ENCPDLLVFR LCIMGRHRPD RITGEPMDEG FGAIVMNCKK LTRLSVSGLL
501: TDKAFAHIGK HGKLIKTLSV AFAGNSDMSL QHVFEGCTRL QKLEVRDSPF GDKGLLSGLN YFYNMRFFWM NSCRLTVRGC GDVAQQMPNL VVEVMKENEG
601: EMDTVDKLYL YRSLAGPRED APSFVNIL

Best Arabidopsis Sequence Match ( AT5G49980.1 )
(BLAST)

001: MTQDRSEMSE DDDDQQSPPL DLPSTAIADP CSSSSSPNKS RNCISNSQTF PDHVLENVLE NVLQFLDSRC DRNAASLVCK SWWRVEALTR SEVFIGNCYA
101: LSPARLTQRF KRVRSLVLKG KPRFADFNLM PPDWGANFAP WVSTMAQAYP CLEKVDLKRM FVTDDDLALL ADSFPGFKEL ILVCCEGFGT SGISIVANKC
201: RKLKVLDLIE SEVTDDEVDW ISCFPEDVTC LESLAFDCVE APINFKALEG LVARSPFLKK LRLNRFVSLV ELHRLLLGAP QLTSLGTGSF SHDEEPQSEQ
301: EPDYAAAFRA CKSVVCLSGF RELMPEYLPA IFPVCANLTS LNFSYANISP DMFKPIILNC HKLQVFWALD SICDEGLQAV AATCKELREL RIFPFDPRED
401: SEGPVSELGL QAISEGCRKL ESILYFCQRM TNAAVIAMSE NCPELTVFRL CIMGRHRPDH VTGKPMDEGF GAIVKNCKKL TRLAVSGLLT DQAFRYMGEY
501: GKLVRTLSVA FAGDSDMALR HVLEGCPRLQ KLEIRDSPFG DVALRSGMHR YYNMRFVWMS ACSLSKGCCK DIARAMPNLV VEVIGSDDDD DNRDYVETLY
601: MYRSLDGPRN DAPKFVTIL

Arabidopsis Description

AFB5AFB5 [Source:UniProtKB/TrEMBL;Acc:A0A178UB83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.