Factsheet for HORVU4Hr1G080360.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

plastid 2
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, plastid
iPSORT:	plastid
MultiLoc:	cytosol
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24390.1	HORVU0Hr1G001280.1	AT2G41090.1	17360592
AT4G24390.1	HORVU2Hr1G016740.4	AT2G41090.1	17360592
AT4G24390.1	HORVU3Hr1G038010.1	AT2G41090.1	17360592
AT4G24390.1	HORVU3Hr1G079210.4	AT2G41090.1	17360592
AT4G24390.1	HORVU4Hr1G026290.3	AT2G41090.1	17360592
AT4G24390.1	HORVU5Hr1G014060.1	AT2G41090.1	17360592
AT4G24390.1	HORVU5Hr1G014070.2	AT2G41090.1	17360592
AT4G24390.1	HORVU5Hr1G044710.4	AT2G41090.1	17360592
AT4G24390.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT4G24390.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT4G24390.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT4G24390.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT4G24390.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT4G24390.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT4G24390.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT4G24390.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
AT4G24390.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
AT4G24390.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
AT4G24390.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
AT4G24390.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
AT4G24390.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
AT4G24390.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
AT4G24390.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
AT4G24390.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G015730.1	Barley	cytosol, peroxisome, plastid	95.34	97.9
HORVU6Hr1G077570.1	Barley	mitochondrion	96.79	52.87
TraesCS6A01G315300.1	Wheat	plastid	94.75	50.23
TraesCS6B01G345800.1	Wheat	plastid	93.88	49.92
TraesCS6D01G294600.1	Wheat	plastid	94.17	49.85
HORVU6Hr1G021040.2	Barley	extracellular	19.53	47.86
Os02t0759700-01	Rice	cytosol	85.42	46.0
Zm00001d052188_P001	Maize	plastid	81.92	42.19
EES05842	Sorghum	plastid	81.34	42.15
Zm00001d018126_P001	Maize	plastid	81.63	42.11
GSMUA_Achr3P06710_001	Banana	cytosol	69.97	41.88
GSMUA_Achr5P05520_001	Banana	cytosol	67.64	39.52
VIT_18s0001g07120.t01	Wine grape	cytosol	67.06	38.72
KRH62206	Soybean	cytosol	63.56	37.39
KRH52925	Soybean	cytosol	63.27	36.97
CDY03450	Canola	cytosol	63.27	35.57
CDY21439	Canola	cytosol	62.39	35.43
Bra013798.1-P	Field mustard	cytosol	62.68	35.42
Bra000604.1-P	Field mustard	cytosol, plastid	62.68	35.42
CDY34286	Canola	cytosol	62.68	35.3
CDX83172	Canola	cytosol, plastid	62.39	35.26
PGSC0003DMT400005419	Potato	cytosol	62.97	35.24
AT5G49980.1	Thale cress	nucleus	63.27	35.06
Solyc04g074980.2.1	Tomato	cytosol	62.97	34.67
AT4G24390.1	Thale cress	cytosol, plastid	62.39	34.35
KRH72427	Soybean	cytosol	62.68	34.13
KRH16819	Soybean	cytosol	63.27	33.91
HORVU4Hr1G078120.4	Barley	cytosol, plastid	59.18	29.77
HORVU2Hr1G070800.1	Barley	cytosol	48.69	29.09
HORVU5Hr1G075620.2	Barley	cytosol	46.94	28.35
HORVU1Hr1G021550.4	Barley	cytosol	45.19	24.14
HORVU4Hr1G060950.3	Barley	cytosol	28.86	16.89
HORVU1Hr1G073230.1	Barley	cytosol	27.99	16.24
HORVU3Hr1G085210.2	Barley	cytosol	27.99	16.16

Protein Annotations

EnsemblPlants:HORVU4Hr1G080360.1	EnsemblPlantsGene:HORVU4Hr1G080360	Gene3D:3.80.10.10	InterPro:IPR032675	InterPro:LRR_dom_sf	PANTHER:PTHR43944
PANTHER:PTHR43944:SF8	SUPFAM:SSF52047	UniParc:UPI000B46FC5E	UniProt:A0A287PTU6	MapMan:11.2.2.1.1	:

Description

No Description!

Coordinates

chrchr4H:+:615149701..615151350

Molecular Weight (calculated)

37870.0 Da

IEP (calculated)

6.390

GRAVY (calculated)

0.086

Length

343 amino acids

Sequence
(BLAST)

001: MARAPHLTHL GTGSFRSEPG PGGALSVSEL ATCFAASRSL VCLSGFLDVN GAYLPAIYQV CPNLTSLNFS FAALTDEEFI PVIRHCINLR TLWVLDTVGD
101: EGLRAVAETC SNLRELRVFP LDATEDSEGS VSDIGLQAIS EGCRKLESIL YFCQRMTNAA VVAMSENCPD LLVFRLCIMG RHRPDRITGE PMDEGFGAIV
201: MNCKKLTRLL VSGLLTDKAF AHIGKHGKLI KTLFVAFVGN SDMPLKHVFE GCTRLQKFEV RDSPFGDKGL LSGLNYFYNM RFFWMNSCRL TVRGCGDVAQ
301: QMPNLVVEVM KEKEGEIDTV DKLYLYRSLA GPREDAPSFV NIL

Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL

Arabidopsis Description

AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.