Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G119100.1 | Wheat | cytosol, peroxisome, plastid | 98.31 | 98.81 |
| TraesCS1D01G099900.1 | Wheat | cytosol | 99.32 | 98.0 |
| Os05t0150500-00 | Rice | plastid | 89.19 | 89.95 |
| HORVU1Hr1G021550.4 | Barley | cytosol | 95.44 | 88.01 |
| KXG21312 | Sorghum | plastid | 86.66 | 86.8 |
| Zm00001d010863_P001 | Maize | plastid | 85.64 | 85.93 |
| GSMUA_Achr5P26930_001 | Banana | cytosol | 55.91 | 71.34 |
| GSMUA_Achr3P23850_001 | Banana | cytosol | 69.43 | 70.62 |
| Solyc06g008470.1.1 | Tomato | extracellular | 6.76 | 70.18 |
| PGSC0003DMT400093216 | Potato | mitochondrion | 16.39 | 63.4 |
| Solyc06g008440.1.1 | Tomato | extracellular | 6.76 | 62.5 |
| VIT_07s0104g01320.t01 | Wine grape | cytosol | 60.47 | 62.15 |
| Solyc09g074520.2.1 | Tomato | cytosol | 60.3 | 61.45 |
| KRG96377 | Soybean | cytosol | 60.81 | 61.33 |
| PGSC0003DMT400029517 | Potato | cytosol | 60.14 | 61.27 |
| KRH71533 | Soybean | cytosol | 60.14 | 60.85 |
| VIT_14s0030g01240.t01 | Wine grape | cytosol | 59.63 | 60.76 |
| KRH31921 | Soybean | cytosol | 59.97 | 60.68 |
| PGSC0003DMT400053430 | Potato | cytosol | 27.53 | 60.59 |
| KRH68108 | Soybean | cytosol | 59.97 | 60.58 |
| CDY53998 | Canola | cytosol | 59.29 | 60.1 |
| CDY68868 | Canola | cytosol | 54.73 | 60.0 |
| CDY53774 | Canola | cytosol | 58.28 | 58.87 |
| Bra000842.1-P | Field mustard | cytosol | 58.28 | 58.87 |
| Bra034191.1-P | Field mustard | cytosol | 58.11 | 58.8 |
| PGSC0003DMT400061752 | Potato | plastid | 57.6 | 58.79 |
| Bra003518.1-P | Field mustard | cytosol | 58.95 | 58.75 |
| AT4G03190.1 | Thale cress | cytosol, plastid | 57.94 | 58.63 |
| CDX90899 | Canola | cytosol | 57.94 | 58.53 |
| AT3G62980.1 | Thale cress | cytosol | 58.61 | 58.42 |
| CDY11468 | Canola | cytosol | 58.11 | 57.82 |
| Bra007720.1-P | Field mustard | cytosol | 58.11 | 57.82 |
| PGSC0003DMT400056570 | Potato | cytosol | 57.94 | 57.74 |
| CDX76680 | Canola | cytosol | 57.94 | 57.65 |
| VIT_12s0035g00130.t01 | Wine grape | cytosol, extracellular, nucleus | 14.19 | 57.14 |
| Solyc06g008460.1.1 | Tomato | extracellular | 22.8 | 56.96 |
| TraesCS2A01G286200.1 | Wheat | cytosol | 54.22 | 55.92 |
| Solyc06g008810.2.1 | Tomato | cytosol | 39.36 | 55.34 |
| CDY21947 | Canola | plastid, vacuole | 57.77 | 54.63 |
| PGSC0003DMT400008765 | Potato | cytosol | 9.8 | 54.21 |
| CDX67912 | Canola | endoplasmic reticulum, golgi | 58.95 | 54.11 |
| CDY22108 | Canola | endoplasmic reticulum, golgi, plastid, vacuole | 58.11 | 53.83 |
| PGSC0003DMT400013682 | Potato | cytosol, mitochondrion | 12.67 | 53.57 |
| TraesCS5A01G281100.1 | Wheat | cytosol | 51.01 | 53.08 |
| Bra014378.1-P | Field mustard | cytosol | 52.36 | 49.52 |
| CDX89163 | Canola | cytosol | 52.36 | 49.52 |
| Solyc06g007840.2.1 | Tomato | extracellular, plastid | 6.76 | 48.78 |
| Solyc06g008780.1.1 | Tomato | extracellular | 40.03 | 47.78 |
| Solyc05g009260.1.1 | Tomato | extracellular | 6.42 | 46.91 |
| TraesCS4A01G001800.1 | Wheat | cytosol | 43.92 | 42.76 |
| TraesCS7A01G176200.1 | Wheat | cytosol | 44.93 | 42.63 |
| TraesCS6A01G315300.1 | Wheat | plastid | 46.45 | 42.5 |
| Solyc06g007830.1.1 | Tomato | endoplasmic reticulum, extracellular | 7.6 | 39.47 |
| Solyc06g084490.1.1 | Tomato | plastid | 11.66 | 32.86 |
| TraesCS3A01G367500.1 | Wheat | cytosol | 29.22 | 31.06 |
| TraesCS4A01G091200.1 | Wheat | cytosol | 29.22 | 29.52 |
| TraesCS1A01G279100.1 | Wheat | cytosol | 28.38 | 28.38 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G091300.1 | EnsemblPlantsGene:TraesCS1A01G091300 | Gene3D:1.20.1280.50 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt_Cys-con_subtyp | PANTHER:PTHR43944 | PANTHER:PTHR43944:SF7 | PFAM:PF00646 | SEG:seg | SMART:SM00367 |
| SUPFAM:SSF52047 | SUPFAM:SSF81383 | MapMan:11.2.2.1.1 | MapMan:19.2.2.8.1.4.6 | : | : |
Description
No Description!
Coordinates
chr1A:-:82947703..82952476
Molecular Weight (calculated)
64625.9 Da
IEP (calculated)
6.136
GRAVY (calculated)
0.055
Length
592 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRGGARDGA GPAAAAAPPW HSLPDEVLEH AFSFLPAAAD RGAAAAVCHG WLGAERRSRR RLAVANCYAA APRDAVDRFP SVRAAEVKGK PHFADFGLVP
101: PAWGAEAAPW VAAAAEGWPL LEELSFKRMV VTDECLEMIA SSFRNFQVLR LVSCEGFSTA GLAAITEGCR NLRELDLQEN YIEDCSSHWL SYFPESFTSL
201: ETLNFSCLEG EVNFAVLERL VSRCRNLKTL KLNNAIPLDK VASLLRKAPQ LVELGTGKFS AEYHSDLFAK LEAAFAGCKS LRRLSGAWDA VPDYLPAFYC
301: VCEGLTSLNL SYATVRGPEL IKFISRCKNL QQLWVMDLIE DHGLAVVAGS CSKLQELRVF PSDPFGAGQV LLTERGLVDV SASCPMLESV LYFCGQMTNE
401: ALITIAKNRP NFTCFRLCIL EPRTPDYVTR ESLDAGFSAI VESCKGLRRL SVSGLLTDLV FKSIGANGNC LEMLSIAFAG NSDLGLHYIL SGCKSLKKLE
501: IRDCPFGNKP LLANAAKLET MRSLWMSSCS LTLGACRQLA EKMPRLTVEI MNDPGRTCPV ESLPDDSPVE TLYVYRTIAG PRSDTPDYVQ IV
101: PAWGAEAAPW VAAAAEGWPL LEELSFKRMV VTDECLEMIA SSFRNFQVLR LVSCEGFSTA GLAAITEGCR NLRELDLQEN YIEDCSSHWL SYFPESFTSL
201: ETLNFSCLEG EVNFAVLERL VSRCRNLKTL KLNNAIPLDK VASLLRKAPQ LVELGTGKFS AEYHSDLFAK LEAAFAGCKS LRRLSGAWDA VPDYLPAFYC
301: VCEGLTSLNL SYATVRGPEL IKFISRCKNL QQLWVMDLIE DHGLAVVAGS CSKLQELRVF PSDPFGAGQV LLTERGLVDV SASCPMLESV LYFCGQMTNE
401: ALITIAKNRP NFTCFRLCIL EPRTPDYVTR ESLDAGFSAI VESCKGLRRL SVSGLLTDLV FKSIGANGNC LEMLSIAFAG NSDLGLHYIL SGCKSLKKLE
501: IRDCPFGNKP LLANAAKLET MRSLWMSSCS LTLGACRQLA EKMPRLTVEI MNDPGRTCPV ESLPDDSPVE TLYVYRTIAG PRSDTPDYVQ IV
001: MQKRIALSFP EEVLEHVFSF IQLDKDRNSV SLVCKSWYEI ERWCRRKVFI GNCYAVSPAT VIRRFPKVRS VELKGKPHFA DFNLVPDGWG GYVYPWIEAM
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
101: SSSYTWLEEI RLKRMVVTDD CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAATCRNLKE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLASEVSF
201: SALERLVTRC PNLKSLKLNR AVPLEKLATL LQRAPQLEEL GTGGYTAEVR PDVYSGLSVA LSGCKELRCL SGFWDAVPAY LPAVYSVCSR LTTLNLSYAT
301: VQSYDLVKLL CQCPKLQRLW VLDYIEDAGL EVLASTCKDL RELRVFPSEP FVMEPNVALT EQGLVSVSMG CPKLESVLYF CRQMTNAALI TIARNRPNMT
401: RFRLCIIEPK APDYLTLEPL DIGFGAIVEH CKDLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGDSD LGMHHVLSGC DSLRKLEIRD CPFGDKALLA
501: NASKLETMRS LWMSSCSVSF GACKLLGQKM PKLNVEVIDE RGAPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQDS TMRFSRQIIT TNGL
Arabidopsis Description
TIR1TIR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA54]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.