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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112 nucleus
CDX73212 nucleus
CDX80590 nucleus
CDX84385
CDX85931 nucleus
CDX87650 nucleus
CDX89042 nucleus
CDX89832
CDX92973
CDY01389 nucleus, nucleus
CDY10068
CDY10349
CDY10694
CDY13521 nucleus
CDY15493
CDY16736
CDY18214
CDY29370 nucleus, nucleus
CDY30781
CDY32537
CDY36883
CDY39073 nucleus
CDY41500
CDY43408 nucleus, nucleus
CDY44209 nucleus, nucleus
CDY48127
CDY53735
CDY63072
CDY63159 nucleus, nucleus
CDY63910
CDY67544 nucleus, nucleus
CDY68971 nucleus, nucleus
CDY69121 nucleus

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G62980.1 CDX89832 AT1G04250.1 11713520
AT3G62980.1 CDY10068 AT1G04250.1 11713520
AT3G62980.1 CDY15493 AT1G04250.1 11713520
AT3G62980.1 CDY18214 AT1G04250.1 11713520
AT3G62980.1 CDY32537 AT1G04250.1 11713520
AT3G62980.1 CDY63072 AT1G04250.1 11713520
AT3G62980.1 CDY01389 AT1G20140.1 23226441
AT3G62980.1 CDY29370 AT1G20140.1 23226441
AT3G62980.1 CDY43408 AT1G20140.1 23226441
AT3G62980.1 CDY44209 AT1G20140.1 23226441
AT3G62980.1 CDY63159 AT1G20140.1 23226441
AT3G62980.1 CDY67544 AT1G20140.1 23226441
AT3G62980.1 CDY68971 AT1G20140.1 23226441
AT3G62980.1 CDX68112 AT1G75950.1 10398681
AT3G62980.1 CDX73212 AT1G75950.1 10398681
AT3G62980.1 CDX80590 AT1G75950.1 10398681
AT3G62980.1 CDX85931 AT1G75950.1 10398681
AT3G62980.1 CDX87650 AT1G75950.1 10398681
AT3G62980.1 CDY13521 AT1G75950.1 10398681
AT3G62980.1 CDY39073 AT1G75950.1 10398681
AT3G62980.1 CDX68112 AT1G75950.1 12795696
AT3G62980.1 CDX73212 AT1G75950.1 12795696
AT3G62980.1 CDX80590 AT1G75950.1 12795696
AT3G62980.1 CDX85931 AT1G75950.1 12795696
AT3G62980.1 CDX87650 AT1G75950.1 12795696
AT3G62980.1 CDY13521 AT1G75950.1 12795696
AT3G62980.1 CDY39073 AT1G75950.1 12795696
AT3G62980.1 CDX68112 AT1G75950.1 23226441
AT3G62980.1 CDX73212 AT1G75950.1 23226441
AT3G62980.1 CDX80590 AT1G75950.1 23226441
AT3G62980.1 CDX85931 AT1G75950.1 23226441
AT3G62980.1 CDX87650 AT1G75950.1 23226441
AT3G62980.1 CDY13521 AT1G75950.1 23226441
AT3G62980.1 CDY39073 AT1G75950.1 23226441
AT3G62980.1 CDY01389 AT2G25700.1 23226441
AT3G62980.1 CDY29370 AT2G25700.1 23226441
AT3G62980.1 CDY43408 AT2G25700.1 23226441
AT3G62980.1 CDY44209 AT2G25700.1 23226441
AT3G62980.1 CDY63159 AT2G25700.1 23226441
AT3G62980.1 CDY67544 AT2G25700.1 23226441
AT3G62980.1 CDY68971 AT2G25700.1 23226441
AT3G62980.1 CDX89042 AT3G21850.1 12795696
AT3G62980.1 CDY69121 AT3G21850.1 12795696
AT3G62980.1 CDX89042 AT3G21850.1 23226441
AT3G62980.1 CDY69121 AT3G21850.1 23226441
AT3G62980.1 CDX92973 AT3G23050.1 11713520
AT3G62980.1 CDY10349 AT3G23050.1 11713520
AT3G62980.1 CDY10694 AT3G23050.1 11713520
AT3G62980.1 CDY30781 AT3G23050.1 11713520
AT3G62980.1 CDY63910 AT3G23050.1 11713520
AT3G62980.1 CDY36883 AT4G14560.1 15546359
AT3G62980.1 CDY53735 AT4G14560.1 15546359
AT3G62980.1 CDX84385 AT5G63110.1 12445118
AT3G62980.1 CDY16736 AT5G63110.1 12445118
AT3G62980.1 CDY41500 AT5G63110.1 12445118
AT3G62980.1 CDY48127 AT5G63110.1 12445118
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra014378.1-P Field mustard cytosol 99.52 99.52
CDY68868 Canola cytosol 77.96 90.37
CDY11468 Canola cytosol 81.15 85.38
CDY53998 Canola cytosol 79.55 85.27
AT3G62980.1 Thale cress cytosol 80.51 84.85
CDX76680 Canola cytosol 80.35 84.54
CDX67912 Canola endoplasmic reticulum, golgi 79.71 77.36
Solyc06g008440.1.1 Tomato extracellular 7.83 76.56
VIT_07s0104g01320.t01 Wine grape cytosol 67.09 72.92
KRH31921 Soybean cytosol 67.41 72.14
KRH71533 Soybean cytosol 67.09 71.79
Solyc09g074520.2.1 Tomato cytosol 65.81 70.91
KRH68108 Soybean cytosol 66.13 70.65
PGSC0003DMT400029517 Potato cytosol 65.5 70.57
KRG96377 Soybean cytosol 65.81 70.19
Solyc06g008460.1.1 Tomato extracellular 25.4 67.09
PGSC0003DMT400056570 Potato cytosol 63.1 66.5
PGSC0003DMT400061752 Potato plastid 61.34 66.21
Solyc06g008810.2.1 Tomato cytosol 42.17 62.71
PGSC0003DMT400053430 Potato cytosol 26.52 61.71
PGSC0003DMT400008765 Potato cytosol 10.54 61.68
CDY53774 Canola cytosol 56.87 60.75
CDX90899 Canola cytosol 56.55 60.41
GSMUA_Achr5P26930_001 Banana cytosol 43.13 58.19
GSMUA_Achr3P23850_001 Banana cytosol 53.35 57.39
CDY21947 Canola plastid, vacuole 57.03 57.03
Solyc06g007840.2.1 Tomato extracellular, plastid 7.35 56.1
CDY22108 Canola endoplasmic reticulum, golgi, plastid, vacuole 57.19 56.02
CDY28523 Canola cytosol 50.32 54.78
CDY34211 Canola cytosol 50.0 54.43
CDX97301 Canola cytosol 7.99 54.35
Os05t0150500-00 Rice plastid 50.32 53.66
KXG21312 Sorghum plastid 50.64 53.64
CDY31282 Canola cytosol 50.16 53.49
Zm00001d010863_P001 Maize plastid 50.32 53.39
CDY16034 Canola cytosol 49.2 53.2
CDY26594 Canola cytosol 49.04 53.11
CDY21068 Canola cytosol 50.0 53.05
CDX71968 Canola cytosol 48.72 52.77
TraesCS1A01G091300.1 Wheat cytosol 49.52 52.36
TraesCS1B01G119100.1 Wheat cytosol, peroxisome, plastid 49.2 52.29
Solyc06g008780.1.1 Tomato extracellular 41.05 51.81
TraesCS1D01G099900.1 Wheat cytosol 49.52 51.67
PGSC0003DMT400013682 Potato cytosol, mitochondrion 11.18 50.0
PGSC0003DMT400093216 Potato mitochondrion 11.66 47.71
HORVU1Hr1G021550.4 Barley cytosol 48.4 47.2
CDY21439 Canola cytosol 41.37 42.88
CDX83172 Canola cytosol, plastid 41.37 42.67
CDY03450 Canola cytosol 40.1 41.15
CDY34286 Canola cytosol 39.78 40.89
Solyc06g084490.1.1 Tomato plastid 12.46 37.14
Solyc05g009260.1.1 Tomato extracellular 4.15 32.1
Solyc06g008470.1.1 Tomato extracellular 2.88 31.58
CDY24941 Canola cytosol 28.27 30.0
CDX74819 Canola cytosol 27.96 29.17
CDX93223 Canola cytosol 27.32 28.93
CDY20501 Canola cytosol 27.64 28.74
CDY07041 Canola cytosol 27.0 28.55
CDX93225 Canola cytosol 26.36 27.78
CDY07040 Canola cytosol 26.68 27.51
CDY60996 Canola endoplasmic reticulum, golgi 28.27 25.18
Solyc06g007830.1.1 Tomato endoplasmic reticulum, extracellular 4.47 24.56
Protein Annotations
Gene3D:1.20.1280.50MapMan:11.2.2.1.1MapMan:19.2.2.8.1.4.6Gene3D:3.80.10.10EnsemblPlants:CDX89163ProteinID:CDX89163
ProteinID:CDX89163.1InterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515
EnsemblPlantsGene:GSBRNA2T00149316001InterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rpt_Cys-con_subtypPFAM:PF12937
PANTHER:PTHR43944PANTHER:PTHR43944:SF7SMART:SM00256SMART:SM00367SUPFAM:SSF52047SUPFAM:SSF81383
UniParc:UPI0004EE4577:::::
Description
BnaA04g00230D
Coordinates
chrLK031857:-:1469450..1473204
Molecular Weight (calculated)
70261.0 Da
IEP (calculated)
7.987
GRAVY (calculated)
-0.051
Length
626 amino acids
Sequence
(BLAST)
001: MYKRVSLSFP EEVLEHVFSF IHVDKDRNSV SLVCKSWYEI ERWCRRKVFV GNCYAVSPGR VIRRFPKLRS VELKGKPHFA DFNLVPEGWG GYVYPWIEAM
101: STSYTWLEEI RLKRMVVSDE CLELIAKSFK NFKVLVLSSC EGFSTDGLAA IAASCRNLRE LDLRESDVDD VSGHWLSHFP DTYTSLVSLN ISCLSSELSF
201: SALERLVTRC PSLKSLKLNR AVPLEKLAIL LQRAPQLEEF GTGGYTADVR PDVFSDLSVA LSGCKKLKCL SGFWDAAPAY LPAVYSVCCR VTTLNLSYAT
301: VQSYDLVKLL SQCPKLQRLW VLDYIEDTGL EVLASTCKDL RELRVFPSDP FVMEANVALT EQGLVSVSMG CPKLESVLYF CRQMTNDALV TIARNRPNMT
401: RFRLCIIEPK APDHMTLEPL DVGFGAIVEH CKNLRRLSLS GLLTDKVFEY IGTYAKKMEM LSVAFAGESD LGMHHVLSGF GACKLLGQKM PKLNVEVIDE
501: RGPPDSRPES CPVERVFIYR TVAGPRFDMP GFVWNMDQQH STMRVCQGNG YSVKGTAYIS LISGALDPNG YPNGALIYQK NSYSFVTRGN QVANEIAVSM
601: TQVLYWSDLA SKPHRSRSAN SSTLVR
Best Arabidopsis Sequence Match ( AT1G12820.1 )
(BLAST)
001: MNYFPDEVIE HVFDFVASHK DRNSISLVCK SWHKIERFSR KEVFIGNCYA INPERLIRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVHP WIEALARSRV
101: GLEELRLKRM VVTDESLDLL SRSFANFKSL VLVSCEGFTT DGLASIAANC RHLRELDLQE NEIDDHRGQW LNCFPDSCTT LMSLNFACLK GETNVAALER
201: LVARSPNLKS LKLNRAVPLD ALARLMSCAP QLVDLGVGSY ENEPDPESFA KLMTAIKKYT SLRSLSGFLE VAPLCLPAFY PICQNLISLN LSYAAEIQGN
301: HLIKLIQLCK RLQRLWILDS IGDKGLAVVA ATCKELQELR VFPSDVHGEE DNNASVTEVG LVAISAGCPK LHSILYFCKQ MTNAALIAVA KNCPNFIRFR
401: LCILEPHKPD HITFQSLDEG FGAIVQACKG LRRLSVSGLL TDQVFLYIGM YAEQLEMLSI AFAGDTDKGM LYVLNGCKKM RKLEIRDSPF GNAALLADVG
501: RYETMRSLWM SSCEVTLGGC KRLAQNSPRL NVEIINENEN NGMEQNEEDE REKVDKLYLY RTVVGTRKDA PPYVRIL
Arabidopsis Description
AFB3Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.