CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67912
CDX74819
CDX76680
CDX89163
CDX93223
CDX93225
CDY07040
CDY07041
CDY11468
CDY20501
CDY24941
CDY53998
CDY60996
CDY68868

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63110.1	CDX74819	AT2G39940.1	12445118
AT5G63110.1	CDX93223	AT2G39940.1	12445118
AT5G63110.1	CDX93225	AT2G39940.1	12445118
AT5G63110.1	CDY07040	AT2G39940.1	12445118
AT5G63110.1	CDY07041	AT2G39940.1	12445118
AT5G63110.1	CDY20501	AT2G39940.1	12445118
AT5G63110.1	CDY24941	AT2G39940.1	12445118
AT5G63110.1	CDY60996	AT2G39940.1	12445118
AT5G63110.1	CDX67912	AT3G62980.1	12445118
AT5G63110.1	CDX76680	AT3G62980.1	12445118
AT5G63110.1	CDX89163	AT3G62980.1	12445118
AT5G63110.1	CDY11468	AT3G62980.1	12445118
AT5G63110.1	CDY53998	AT3G62980.1	12445118
AT5G63110.1	CDY68868	AT3G62980.1	12445118

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48127	Canola	nucleus	86.93	93.4
CDY16736	Canola	nucleus	86.53	92.98
AT5G63110.1	Thale cress	nucleus	85.35	91.51
CDY41500	Canola	cytosol	98.42	87.19
Bra038607.1-P	Field mustard	cytosol	97.62	86.49
GSMUA_Achr2P06520_001	Banana	cytosol	55.25	76.65
KRH54336	Soybean	cytosol, nucleus, plastid	24.16	76.25
KRH57122	Soybean	nucleus	71.09	75.42
KRH03236	Soybean	nucleus	70.3	75.21
KRH63609	Soybean	cytosol	68.91	74.84
GSMUA_AchrUn_...	Banana	mitochondrion	51.88	72.38
EES13744	Sorghum	cytoskeleton, cytosol, nucleus	63.76	70.31
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	62.97	69.43
TraesCS6A01G181100.1	Wheat	cytosol	62.77	69.21
TraesCS6B01G210200.1	Wheat	cytosol	62.77	69.21
TraesCS6D01G168400.1	Wheat	cytosol	62.77	69.21
PGSC0003DMT400046818	Potato	cytosol	62.38	69.08
HORVU6Hr1G038010.6	Barley	cytosol	62.57	68.85
Solyc03g112410.1.1	Tomato	cytosol	61.19	68.82
Zm00001d050139_P001	Maize	nucleus	63.37	65.17
KRH54335	Soybean	cytosol, nucleus, plastid	29.31	63.25
CDY48157	Canola	cytosol	48.12	60.9
CDY39567	Canola	cytosol	48.12	59.85
CDY21800	Canola	cytosol	47.52	59.85
CDY39570	Canola	cytosol	46.53	57.46
CDY30008	Canola	nucleus	57.03	57.37
CDY21119	Canola	nucleus	57.03	57.37
CDY48160	Canola	cytosol	45.54	56.23
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	43.17	54.36
CDX99186	Canola	cytosol	45.35	53.76
CDY53952	Canola	plastid	18.42	38.27
Zm00001d024221_P001	Maize	cytosol, nucleus, plastid, vacuole	14.65	37.76
CDX88212	Canola	cytosol, golgi, nucleus, plastid	17.62	22.42
CDX80555	Canola	cytosol, golgi, nucleus, plastid	15.84	21.39
CDY22682	Canola	cytosol	16.24	21.24
CDY06315	Canola	cytosol	16.24	21.24
CDX68980	Canola	mitochondrion, plastid	15.25	18.12
CDX82341	Canola	nucleus	15.84	18.02
CDX75356	Canola	plastid	14.85	17.65
CDY42846	Canola	nucleus	16.63	16.25
CDY24487	Canola	cytosol, nucleus, peroxisome	17.43	16.18
CDX92243	Canola	nucleus	17.43	15.44
CDY16823	Canola	peroxisome	18.81	14.62
CDY02173	Canola	nucleus	18.81	14.59
CDX87200	Canola	peroxisome	18.81	14.5
CDY23088	Canola	nucleus	18.22	14.22
CDY47012	Canola	cytosol	11.68	13.79
CDY52901	Canola	nucleus	10.69	11.59

Protein Annotations

MapMan:12.3.2.1.1	Gene3D:3.40.800.20	GO:A0A078D5H7	EnsemblPlants:CDX84385	ProteinID:CDX84385	ProteinID:CDX84385.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041
EnsemblPlantsGene:GSBRNA2T00141552001	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138
PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625	PANTHER:PTHR10625:SF144
SUPFAM:SSF52768	UniParc:UPI0004EF1747	InterPro:Ureohydrolase_dom_sf	:	:	:

Description

BnaC03g51150D

Coordinates

chrLK031837:-:575988..578607

Molecular Weight (calculated)

56544.6 Da

IEP (calculated)

5.096

GRAVY (calculated)

-0.392

Length

505 amino acids

Sequence
(BLAST)

001: METDESGVSL ASGPDGRKRR VSYFYEPTIG NYYYGQGHPM KPHRIRMAHS LIVHYNLHRR LEISRPYLAD AADIGRFHSP EYVDFLRSVS PESVGDSSAR
101: NLRRFNVGED CPVFDGLFEF CRASAGGSIG AAVKLNRQDA DIAINWGGGL HHAKKSEASG FCYVNDIVLG ILELLKMFRR VLYIDIDVHH GDGVEEAFYT
201: TDRVMTVSFH KFGDFFPGTG HIRDVGAEKG KYYALNVPLN DGMDDESFRS LFRPLIQKVM EVYRPEAVVL QCGADSLSGD RLGCFNLSVK GHADCLRFLR
301: SYNVPLMVLG GGGYTIRNVA RCWCYETAVA VGVEPDNKLP YNEYFEYFGP DYTLHVEPGP MENLNTPKDM ERIRNTLLEQ LSGLIHAPSV PFQHTPPVNR
401: VLDEPEEDLE KRPKPRIWSG TANYESDSDD DEKPLGGFSG INGPTMDRDS TGEDEMEDDS AEPEKPFCFG LKTYLIGIAA IAKDALYTSV KTGFSAICSN
501: TWIWE

Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)

001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S

Arabidopsis Description

HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.