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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:
  • nucleus 4
  • cytosol 1
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytoskeleton, cytosol, nucleus
Any Predictor:cytoskeleton, cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0853400-01
Os03t0265500-01
Os05t0150500-00
Os05t0449500-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G63110.1 Os01t0853400-01 AT2G39940.1 12445118
AT5G63110.1 Os03t0265500-01 AT2G39940.1 12445118
AT5G63110.1 Os05t0449500-01 AT2G39940.1 12445118
AT5G63110.1 Os05t0150500-00 AT3G62980.1 12445118
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G168400.1 Wheat cytosol 92.36 92.36
TraesCS6A01G181100.1 Wheat cytosol 92.36 92.36
TraesCS6B01G210200.1 Wheat cytosol 91.92 91.92
EES13744 Sorghum cytoskeleton, cytosol, nucleus 91.48 91.48
HORVU6Hr1G038010.6 Barley cytosol 90.61 90.41
Zm00001d050139_P001 Maize nucleus 90.61 84.52
GSMUA_Achr2P06520_001 Banana cytosol 63.1 79.4
GSMUA_AchrUn_... Banana mitochondrion 60.04 75.97
KRH54336 Soybean cytosol, nucleus, plastid 25.33 72.5
VIT_17s0000g09070.t01 Wine grape cytosol 71.4 70.47
PGSC0003DMT400069419 Potato nucleus 71.83 69.85
Solyc06g071680.2.1 Tomato cytosol 71.18 69.21
KRH63609 Soybean cytosol 69.43 68.39
KRH03236 Soybean nucleus 69.87 67.8
AT5G63110.1 Thale cress nucleus 69.21 67.3
KRH57122 Soybean nucleus 69.65 67.02
Bra035858.1-P Field mustard nucleus 68.34 66.6
CDY16736 Canola nucleus 68.34 66.6
CDY48127 Canola nucleus 68.12 66.38
CDX84385 Canola cytosol 69.43 62.97
Solyc03g112410.1.1 Tomato cytosol 61.35 62.58
PGSC0003DMT400046818 Potato cytosol 61.79 62.06
KRH54335 Soybean cytosol, nucleus, plastid 30.13 58.97
CDY41500 Canola cytosol 69.43 55.79
Bra038607.1-P Field mustard cytosol 68.78 55.26
Os02t0215200-02 Rice cytoskeleton, cytosol, nucleus 60.92 54.81
Os02t0214900-01 Rice cytoskeleton, cytosol, nucleus 60.7 54.51
Os06t0583400-01 Rice nucleus 60.92 53.86
Zm00001d024221_P001 Maize cytosol, nucleus, plastid, vacuole 20.96 48.98
Os11t0200000-01 Rice cytosol 44.54 44.74
Os04t0409600-01 Rice cytosol 15.94 38.83
Os06t0571100-01 Rice plastid 20.09 26.14
Os05t0440250-01 Rice cytosol, nucleus, plastid 18.78 21.94
Os12t0182700-01 Rice mitochondrion 17.69 18.28
Os05t0440300-01 Rice cytosol, nucleus, plastid 15.5 17.97
Os07t0602200-01 Rice cytosol, nucleus, plastid 24.02 15.83
Os07t0164100-01 Rice nucleus 18.12 13.32
Os05t0440100-02 Rice cytosol 1.75 2.92
Os07t0164300-01 Rice plasma membrane 0.0 0.0
Protein Annotations
MapMan:12.3.2.1.1Gene3D:3.40.800.20EntrezGene:4345332EMBL:AK111861ProteinID:BAD03280.1ProteinID:BAF23510.1
ProteinID:BAT05022.1GO:GO:0000003GO:GO:0003674GO:GO:0003824GO:GO:0004407GO:GO:0005488
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0006139
GO:GO:0006325GO:GO:0006351GO:GO:0006355GO:GO:0006464GO:GO:0006950GO:GO:0007275
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009536GO:GO:0009628GO:GO:0009651
GO:GO:0009719GO:GO:0009737GO:GO:0009790GO:GO:0009791GO:GO:0009793GO:GO:0009941
GO:GO:0009987GO:GO:0010228GO:GO:0010431GO:GO:0016043GO:GO:0016441GO:GO:0016458
GO:GO:0016575GO:GO:0016787GO:GO:0019538GO:GO:0032041GO:GO:0040029GO:GO:0046872
GO:GO:0070932InterPro:His_deacetylseInterPro:His_deacetylse_1InterPro:His_deacetylse_domInterPro:His_deacetylse_dom_sfInterPro:IPR037138
EnsemblPlantsGene:Os08g0344100EnsemblPlants:Os08t0344100-01PFAM:PF00850PIRSF:PIRSF037913PRINTS:PR01270PRINTS:PR01271
PANTHER:PTHR10625PANTHER:PTHR10625:SF144UniProt:Q6ZB59SUPFAM:SSF52768UniParc:UPI000022608CInterPro:Ureohydrolase_dom_sf
RefSeq:XP_015648088.1SEG:seg::::
Description
histone deacetylase 705Histone deacetylase, Regulation of seed germination, Response to ABA and abiotic stresses (Os08t0344100-01)
Coordinates
chr8:+:15554139..15559145
Molecular Weight (calculated)
50833.5 Da
IEP (calculated)
5.113
GRAVY (calculated)
-0.424
Length
458 amino acids
Sequence
(BLAST)
001: MAASGEGASL ASAAGGEDGR RRRVSYFYEP SIGDYYYGQG HPMKPHRIRM AHSLVVHYGL HRLLELSRPY PASDADIRRF HSDDYVAFLA SATGNPALLD
101: ARAVKRFNVG EDCPVFDGLF PFCQASAGGS IGAAVKLNRG DADITVNWAG GLHHAKKGEA SGFCYVNDIV LAILELLKFH RRVLYVDIDV HHGDGVEEAF
201: FTTNRVMTCS FHKYGDFFPG TGHITDVGAG EGKHYALNVP LSDGIDDDTF RDLFQCIIKK VMEVYQPDVV VLQCGADSLA GDRLGCFNLS VKGHADCLRY
301: LRSFNIPMMV LGGGGYTIRN VARCWCYETA VAVGVEPDNK LPYNDYYEYF GPDYNLHIQP RSVENLNSTK DLENIKSMIL DHLSKIEHVP STQFHDRPSD
401: PEAPEQEEED MDKRPPQRSR LWSGGAYESD TEDPDNMKTE TNDLSASSVM KDESNDDS
Best Arabidopsis Sequence Match ( AT5G63110.1 )
(BLAST)
001: MEADESGISL PSGPDGRKRR VSYFYEPTIG DYYYGQGHPM KPHRIRMAHS LIIHYHLHRR LEISRPSLAD ASDIGRFHSP EYVDFLASVS PESMGDPSAA
101: RNLRRFNVGE DCPVFDGLFD FCRASAGGSI GAAVKLNRQD ADIAINWGGG LHHAKKSEAS GFCYVNDIVL GILELLKMFK RVLYIDIDVH HGDGVEEAFY
201: TTDRVMTVSF HKFGDFFPGT GHIRDVGAEK GKYYALNVPL NDGMDDESFR SLFRPLIQKV MEVYQPEAVV LQCGADSLSG DRLGCFNLSV KGHADCLRFL
301: RSYNVPLMVL GGGGYTIRNV ARCWCYETAV AVGVEPDNKL PYNEYFEYFG PDYTLHVDPS PMENLNTPKD MERIRNTLLE QLSGLIHAPS VQFQHTPPVN
401: RVLDEPEDDM ETRPKPRIWS GTATYESDSD DDDKPLHGYS CRGGATTDRD STGEDEMDDD NPEPDVNPPS S
Arabidopsis Description
HDA6Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:B1PXB9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.