Factsheet for Os06t0571100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 2
plastid 6

Predictors

GFP

MS/MS

Papers

plastid: 19505461

plasma membrane: 27800704

gfp PMID: 19505461 doi

PJ Chung, YS Kim, SH Park, BH Nahm, JK Kim

School of Biotechnology and Environmental Engineering, Myongji University, Yongin 449-728, Republic of Korea.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G360500.1	Wheat	plastid	85.23	84.99
TraesCS7A01G362600.1	Wheat	plastid	85.51	84.79
TraesCS7B01G266000.1	Wheat	plastid	84.94	84.7
EER89968	Sorghum	plastid	80.4	80.86
Zm00001d046348_P003	Maize	plastid	80.68	74.54
Solyc08g065350.2.1	Tomato	cytosol	73.3	74.35
VIT_04s0008g00910.t01	Wine grape	plastid	75.0	73.54
PGSC0003DMT400076991	Potato	cytosol	73.86	73.45
KRH05486	Soybean	cytosol	72.16	72.99
Bra009877.1-P	Field mustard	cytosol	68.75	69.34
HORVU0Hr1G021730.1	Barley	cytosol	23.3	68.33
AT5G26040.2	Thale cress	endoplasmic reticulum	69.89	63.57
GSMUA_Achr10P...	Banana	plastid	79.26	63.55
CDX88212	Canola	cytosol, golgi, nucleus, plastid	69.32	61.46
CDX80555	Canola	cytosol, golgi, nucleus, plastid	63.92	60.16
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	26.14	20.09
Os11t0200000-01	Rice	cytosol	25.0	19.3
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	26.42	18.27
Os06t0583400-01	Rice	nucleus	26.7	18.15
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	26.14	18.04
Os04t0409600-01	Rice	cytosol	9.38	17.55
Os05t0440250-01	Rice	cytosol, nucleus, plastid	17.05	15.31
Os12t0182700-01	Rice	mitochondrion	18.47	14.67
Os05t0440300-01	Rice	cytosol, nucleus, plastid	13.35	11.9
Os07t0602200-01	Rice	cytosol, nucleus, plastid	20.74	10.5
Os07t0164100-01	Rice	nucleus	17.9	10.11
Os05t0440100-02	Rice	cytosol	0.85	1.09
Os07t0164300-01	Rice	plasma membrane	0.0	0.0

Protein Annotations

MapMan:12.3.2.1.3	Gene3D:3.40.800.20	EntrezGene:4341352	EMBL:AK100812	ProteinID:BAD61930.1	ProteinID:BAF19828.1
ProteinID:BAS98318.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006325	GO:GO:0006351	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	GO:GO:0032041	GO:GO:0070932	InterPro:His_deacetylse
InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf	InterPro:IPR037138	EnsemblPlantsGene:Os06g0571100	EnsemblPlants:Os06t0571100-01	PFAM:PF00850
PRINTS:PR01270	PANTHER:PTHR43497	PANTHER:PTHR43497:SF2	UniProt:Q5Z608	SUPFAM:SSF52768	UniParc:UPI00004506D2
InterPro:Ureohydrolase_dom_sf	RefSeq:XP_015640935.1	SEG:seg	:	:	:

Description

HISTONE DEACETYLASE 6Similar to HDA2 (Fragment). (Os06t0571100-01)

Coordinates

chr6:-:22123353..22127346

Molecular Weight (calculated)

38742.7 Da

IEP (calculated)

7.979

GRAVY (calculated)

-0.091

Length

352 amino acids

Sequence
(BLAST)

001: MASSAPSAAA GATPPDPLRR DRILSSKLYL DVPGSKAPVV YSPAYDIAFL GIEKLHPFDS SKWGRICKFL TKEGHLEKNR VVEPLEATKD DLLVVHSESY
101: LNSLKSSLKV ASIVELPPVA FIPNWLVQQK LLYPFRKQVG GSILSAKLAL ERGWAINVGG GFHHCSAEQG GGFCAYADIS LCIQFAFVRL NISRVMIIDL
201: DAHQGNGHEK DFANDGRVYT LDMYNAGIYP YDHVAKRYID QKVELVSGTK TEDYLDQLDK ALKVAESRFQ PQLIVYNAGT DILDGDPLGR LKISPQGVVI
301: RDEKVFRFAK DQSIPLLMLT SGGYMKSSAR VIADSIINLS NKNLIELGSQ LG

Best Arabidopsis Sequence Match ( AT5G26040.2 )
(BLAST)

001: MTHTRVISTW TELTRDLAIY LLFTFFAIKV FKFLFSCNRT SEISSFSMAT HPEALRRERI LNSKLYFDVP LSKVSIIYSS SYDISFMGIE KLHPFDSSKW
101: GRVCKFLVSD GFLEEKAIVE PLEASKIDLL VVHSENYLNS LKSSATVARI TEVAPVAFFP NFLVQQKVLY PFRKQVGGTI LAAKLATERG WAINIGGGFH
201: HCTAERGGGF CAFADISLCI HFAFLRLRIS RVMIIDLDAH QGNGHETDLG DDNRVYILDM YNPEIYPFDY RARRFIDQKV EVMSGTTTDE YLRKLDEALE
301: VASRNFQPEL VIYNAGTDIL DGDPLGLLKI SPDGITSRDE KVFRFAREKN IPLVMLTSGG YMKSSARVIA DSIENLSRQG LIQTRPE

Arabidopsis Description

HDA2Histone deacetylase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q944K3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.