Factsheet for Os07t0164300-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 18557835
plasma membrane: 19502382
golgi: 25047511
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g04120.t01	Wine grape	nucleus	10.89	4.73
PGSC0003DMT400014582	Potato	nucleus	1.32	0.66
Solyc03g119730.2.1	Tomato	nucleus	0.99	0.49
Os07t0164100-01	Rice	nucleus	0.66	0.32
TraesCS5D01G076100.1	Wheat	nucleus	0.33	0.16
TraesCS5B01G072100.1	Wheat	nucleus	0.33	0.16
TraesCS5A01G065300.1	Wheat	nucleus	0.33	0.16
HORVU5Hr1G017550.9	Barley	nucleus	0.33	0.16
Zm00001d018864_P002	Maize	nucleus	0.33	0.16
OQU88485	Sorghum	nucleus	0.33	0.16
Os12t0182700-01	Rice	mitochondrion	0.0	0.0
Os11t0200000-01	Rice	cytosol	0.0	0.0
Os08t0344100-01	Rice	cytoskeleton, cytosol, nucleus	0.0	0.0
Os07t0602200-01	Rice	cytosol, nucleus, plastid	0.0	0.0
Os05t0440250-01	Rice	cytosol, nucleus, plastid	0.0	0.0
Os06t0583400-01	Rice	nucleus	0.0	0.0
Os06t0571100-01	Rice	plastid	0.0	0.0
Os05t0440300-01	Rice	cytosol, nucleus, plastid	0.0	0.0
AT3G18520.2	Thale cress	cytosol	0.0	0.0
Os05t0440100-02	Rice	cytosol	0.0	0.0
Os04t0409600-01	Rice	cytosol	0.0	0.0
Os02t0215200-02	Rice	cytoskeleton, cytosol, nucleus	0.0	0.0
Os02t0214900-01	Rice	cytoskeleton, cytosol, nucleus	0.0	0.0
KRH56687	Soybean	nucleus	0.0	0.0
KRH03799	Soybean	nucleus	0.0	0.0
GSMUA_Achr8P20260_001	Banana	nucleus	0.0	0.0
CDY52901	Canola	nucleus	0.0	0.0
CDY24487	Canola	cytosol, nucleus, peroxisome	0.0	0.0
CDX92243	Canola	nucleus	0.0	0.0
CDX82341	Canola	nucleus	0.0	0.0
Bra022329.1-P	Field mustard	nucleus	0.0	0.0
Bra001708.1-P	Field mustard	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.1	EntrezGene:4342474	EMBL:AK073327	EMBL:AK099351
ProteinID:BAC79742.1	ProteinID:BAD30769.1	ProteinID:BAT00191.1	ncoils:Coil	ProteinID:EEE66618.1	GO:GO:0000149
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005886	GO:GO:0006810	GO:GO:0006886	GO:GO:0006887
GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	GO:GO:0061025	InterPro:IPR000727
EnsemblPlantsGene:Os07g0164300	EnsemblPlants:Os07t0164300-01	PFAM:PF00804	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF153	UniProt:Q7XIE2	SMART:SM00397	SMART:SM00503	InterPro:SNARE
SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00001B39FD
RefSeq:XP_015647004.1	SEG:seg	:	:	:	:

Description

Similar to syntaxin 132. (Os07t0164300-01)

Coordinates

chr7:-:3446343..3450330

Molecular Weight (calculated)

34252.4 Da

IEP (calculated)

8.219

GRAVY (calculated)

-0.529

Length

303 amino acids

Sequence
(BLAST)

001: MNNLLTDSFE LPRGGSSRDG DIEMGMQADP SDNLKGFLKK VDAIESLIAK LTNLLHKLQT ANEESKAVTK ARDMKAIKQR MEKDIDEVGK IARMAKTKVD
101: ELEKDNLSNR QKPGCGKGSA VDRSREQTTG AVKKKLKERM DDFQVLREAI RQEYRDVVER RVFTVTGSRP DEETVDNLIE TGRSEQIFQE AIQQQGRGQI
201: LDTVAEIQER HDAVRDLERK LLELQQIFMD MAVLVDAQGD MINNIETHVS NATNHIQQGV SALQNAKKLQ KNSRKWMCYA IILLLIIVVI IVVAVIQPWK
301: KGA

Best Arabidopsis Sequence Match ( AT5G08080.1 )
(BLAST)

001: MNDLLKGSFE LPRGQSSREG DVELGEQQGG DQGLEDFFKK VQVIDKQYDK LDKLLKKLQA SHEESKSVTK APAMKAIKKT MEKDVDEVGS IARFIKGKLE
101: ELDRENLANR QKPGCAKGSG VDRSRTATTL SLKKKLKDKM AEFQVLRENI QQEYRDVVDR RVYTVTGERA DEDTIDELIE TGNSEQIFQK AIQEQGRGQV
201: MDTLAEIQER HDAVRDLEKK LLDLQQIFLD MAVLVDAQGE MLDNIESQVS SAVDHVQSGN TALQRAKSLQ KNSRKWMCIA IIILLIVVAV IVVGVLKPWK
301: NKSA

Arabidopsis Description

SYP132Syntaxin of plants 132 [Source:UniProtKB/TrEMBL;Acc:F4K9K2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.