CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019424.1-P	Field mustard	cytosol	100.0	100.0
CDY08684	Canola	cytosol, mitochondrion, nucleus, peroxisome	94.13	100.0
AT3G44680.1	Thale cress	cytosol	96.01	96.01
AT3G44660.1	Thale cress	cytoskeleton, cytosol, nucleus	30.28	90.85
AT3G44490.1	Thale cress	cytosol	33.57	90.51
PGSC0003DMT400068240	Potato	cytosol	80.28	86.15
VIT_15s0021g00610.t01	Wine grape	cytosol	86.15	85.35
Solyc11g067020.1.1	Tomato	cytosol	86.15	85.35
VIT_06s0061g01510.t01	Wine grape	cytosol, mitochondrion, nucleus	85.68	84.88
KRH25183	Soybean	cytosol	84.04	83.45
KRH30495	Soybean	cytosol	83.8	83.22
EES10729	Sorghum	cytosol	80.52	79.77
TraesCS2D01G291000.1	Wheat	cytosol	80.05	79.3
TraesCS2B01G309700.1	Wheat	cytosol	80.05	79.3
TraesCS2A01G293200.1	Wheat	cytosol	80.05	79.3
Zm00001d003813_P001	Maize	cytosol	78.87	75.17
HORVU2Hr1G072600.1	Barley	endoplasmic reticulum	42.25	72.58
GSMUA_Achr6P17260_001	Banana	plastid	81.69	72.5
HORVU2Hr1G072570.5	Barley	plastid	41.08	62.28
Os04t0409600-01	Rice	cytosol	26.29	59.57
CDY16736	Canola	nucleus	54.46	49.36
CDY48127	Canola	nucleus	54.23	49.15
CDY21119	Canola	nucleus	56.81	48.21
CDY30008	Canola	nucleus	56.81	48.21
CDY48157	Canola	cytosol	42.96	45.86
CDX84385	Canola	cytosol	53.76	45.35
CDY39567	Canola	cytosol	42.72	44.83
CDY21800	Canola	cytosol	42.02	44.64
CDY48160	Canola	cytosol	41.78	43.52
CDY39570	Canola	cytosol	41.08	42.79
CDY41500	Canola	cytosol	53.76	40.18
CDY53952	Canola	plastid	17.84	31.28
CDY22682	Canola	cytosol	18.78	20.73
CDY06315	Canola	cytosol	18.54	20.47
CDX88212	Canola	cytosol, golgi, nucleus, plastid	17.14	18.39
CDX80555	Canola	cytosol, golgi, nucleus, plastid	15.26	17.38
CDX82341	Canola	nucleus	17.61	16.89
CDX75356	Canola	plastid	16.67	16.71
CDX68980	Canola	mitochondrion, plastid	16.2	16.24
CDY42846	Canola	nucleus	18.31	15.09
CDY24487	Canola	cytosol, nucleus, peroxisome	19.25	15.07
CDX92243	Canola	nucleus	19.25	14.39
CDY23088	Canola	nucleus	21.83	14.37
CDY02173	Canola	nucleus	21.6	14.13
CDX87200	Canola	peroxisome	21.13	13.74
CDY16823	Canola	peroxisome	20.66	13.54
CDY47012	Canola	cytosol	12.68	12.62
CDY52901	Canola	nucleus	12.44	11.37

Protein Annotations

MapMan:12.3.2.1.1	MapMan:12.3.2.1.4.1	Gene3D:3.40.800.20	GO:A0A078EDG2	EnsemblPlants:CDX99186	ProteinID:CDX99186
ProteinID:CDX99186.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538
GO:GO:0032041	EnsemblPlantsGene:GSBRNA2T00107365001	InterPro:His_deacetylse	InterPro:His_deacetylse_1	InterPro:His_deacetylse_dom	InterPro:His_deacetylse_dom_sf
InterPro:IPR037138	PFAM:PF00850	PIRSF:PIRSF037913	PRINTS:PR01270	PRINTS:PR01271	PANTHER:PTHR10625
PANTHER:PTHR10625:SF171	SUPFAM:SSF52768	UniParc:UPI0001890A98	InterPro:Ureohydrolase_dom_sf	:	:

Description

BnaA06g18770D

Coordinates

chrLK031908:+:1155202..1158140

Molecular Weight (calculated)

48751.7 Da

IEP (calculated)

5.306

GRAVY (calculated)

-0.421

Length

426 amino acids

Sequence
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENK DLFPNEMARY NLGEDCPVFE
101: DMFEFCQIYA GATIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLRDGID DSSFNRLFRA IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNI PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPDNDY IKYFGPDYSL KIPGGHIENL NTKSYISTIK AQILDNLRYI QHAPSVQMQE VPPDFYIPDF DEDERNPDVR
401: VDQRSRDKQI QRDDEYFDGD KDNDAS

Best Arabidopsis Sequence Match ( AT3G44680.1 )
(BLAST)

001: MRSKDKISYF YDGDVGSVYF GPNHPMKPHR LCMTHHLILA YGLHSKMEVY RPHKAYPIEM AQFHSPDYVE FLQRINPENQ NLFPNEMARY NLGEDCPVFE
101: DLFEFCQLYA GGTIDAARRL NNKLCDIAIN WAGGLHHAKK CDASGFCYIN DLVLGILELL KHHPRVLYID IDVHHGDGVE EAFYFTDRVM TVSFHKFGDK
201: FFPGTGDVKE IGEREGKFYA INVPLKDGID DSSFNRLFRT IISKVVEIYQ PGAIVLQCGA DSLARDRLGC FNLSIDGHAE CVKFVKKFNL PLLVTGGGGY
301: TKENVARCWT VETGILLDTE LPNEIPENDY IKYFAPDFSL KIPGGHIENL NTKSYISSIK VQILENLRYI QHAPSVQMQE VPPDFYIPDF DEDEQNPDVR
401: ADQRSRDKQI QRDDEYFDGD NDNDAS

Arabidopsis Description

HDA9Histone deacetylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0W2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.