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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX92973
CDY10349
CDY10694
CDY30781
CDY63910

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G26810.1 CDX92973 AT3G23050.1 15992545
AT3G26810.1 CDY10349 AT3G23050.1 15992545
AT3G26810.1 CDY10694 AT3G23050.1 15992545
AT3G26810.1 CDY30781 AT3G23050.1 15992545
AT3G26810.1 CDY63910 AT3G23050.1 15992545
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY34211 Canola cytosol 98.43 98.43
AT3G26810.1 Thale cress cytosol 92.35 92.35
CDX71968 Canola cytosol 82.61 82.18
CDY16034 Canola cytosol 82.43 81.87
CDY26594 Canola cytosol 82.09 81.66
CDY21068 Canola cytosol 81.74 79.66
CDY31282 Canola cytosol 80.7 79.05
VIT_14s0068g01330.t01 Wine grape cytosol 75.48 75.87
KRG94665 Soybean cytosol 74.09 74.48
KRH06858 Soybean cytosol 73.04 73.43
KRH70053 Soybean cytosol 72.52 72.77
GSMUA_AchrUn_... Banana cytosol 66.43 71.67
GSMUA_Achr6P08000_001 Banana cytosol 65.39 70.54
GSMUA_Achr6P16510_001 Banana cytosol 64.87 69.98
GSMUA_Achr10P... Banana cytosol 64.52 69.61
KRH08397 Soybean cytosol 68.87 69.11
GSMUA_Achr9P01140_001 Banana cytosol 63.83 68.86
Zm00001d003911_P003 Maize cytosol 66.26 66.26
TraesCS2D01G285000.1 Wheat cytosol 65.91 66.03
HORVU2Hr1G070800.1 Barley cytosol 65.91 66.03
TraesCS2A01G286200.1 Wheat cytosol 65.74 65.85
Os04t0395600-01 Rice cytosol 65.74 65.74
TraesCS2B01G302900.1 Wheat cytosol 65.57 65.68
KXG26136 Sorghum cytosol 66.61 64.59
Zm00001d025268_P001 Maize cytosol 64.35 64.57
GSMUA_Achr6P20580_001 Banana cytosol 56.0 64.4
HORVU6Hr1G021040.2 Barley extracellular 14.78 60.71
CDY68868 Canola cytosol 56.17 59.81
CDY53998 Canola cytosol 59.83 58.9
TraesCS5D01G288000.1 Wheat cytosol 58.09 58.7
TraesCS5B01G280100.1 Wheat cytosol 58.26 58.57
Os11t0515500-01 Rice cytosol 57.74 58.45
HORVU5Hr1G075620.2 Barley cytosol 57.74 58.45
TraesCS5A01G281100.1 Wheat cytosol 57.74 58.35
EES09791 Sorghum cytosol 58.61 58.3
CDY11468 Canola cytosol 60.17 58.15
CDX76680 Canola cytosol 60.0 57.98
Zm00001d007357_P005 Maize cytosol 57.04 57.24
CDY53774 Canola cytosol 58.09 57.0
CDX90899 Canola cytosol 57.22 56.14
CDX67912 Canola endoplasmic reticulum, golgi 59.65 53.18
CDY21947 Canola plastid, vacuole 57.74 53.04
CDY22108 Canola endoplasmic reticulum, golgi, plastid, vacuole 57.91 52.11
CDX89163 Canola cytosol 54.78 50.32
CDY21439 Canola cytosol 52.17 49.67
CDX83172 Canola cytosol, plastid 52.0 49.26
CDY03450 Canola cytosol 50.26 47.38
CDY34286 Canola cytosol 50.09 47.29
CDX97301 Canola cytosol 6.96 43.48
CDY24941 Canola cytosol 31.3 30.51
CDY20501 Canola cytosol 31.65 30.23
CDX74819 Canola cytosol 31.48 30.17
CDX93223 Canola cytosol 30.78 29.95
CDX93225 Canola cytosol 30.78 29.8
CDY07041 Canola cytosol 30.26 29.39
CDY07040 Canola cytosol 30.43 28.83
CDY60996 Canola endoplasmic reticulum, golgi 31.3 25.6
Protein Annotations
EnsemblPlants:CDY28523EnsemblPlantsGene:GSBRNA2T00040435001Gene3D:1.20.1280.50Gene3D:3.80.10.10GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:F-box_domInterPro:IPR001810InterPro:IPR032675InterPro:LRR_dom_sfInterPro:Leu-rich_rpt_Cys-con_subtyp
PANTHER:PTHR43944PANTHER:PTHR43944:SF9ProteinID:CDY28523ProteinID:CDY28523.1SMART:SM00256SMART:SM00367
SUPFAM:SSF52047UniParc:UPI0004EED812UniProt:A0A078GV75MapMan:11.2.2.1.1MapMan:19.2.2.8.1.4.6:
Description
BnaC02g36370DBnaC02g36370D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GV75]
Coordinates
chrLK032221:-:391664..394469
Molecular Weight (calculated)
64713.4 Da
IEP (calculated)
7.536
GRAVY (calculated)
-0.075
Length
575 amino acids
Sequence
(BLAST)
001: MNYFPDEVIE HVFDFVTSHK DRNSISLVCK SWFKIERYSR QNVFIGNCYS ISPERLLRRF PCFKSLTLKG KPHFADFNLV PHGWGGFVQP WIEALARSRV
101: GLEELRLKRM VVTDEGLELL SRSFVNFKSL VLVSCEGFST DGLASIASNC RHLRDLDLQE NEIDDHRGQW LSCFPETYTS LVTLNFACLE GETNLVALER
201: LVARSPNLRS LKLNRAVPLD ALARLMACAP QIVDLGVGSY EDEQDSESCL KLQAAIRKCT SLRSLSGFLE AAPHCLSAFH PVCHNLTSLN LSYAAEIHGS
301: HLIKLIEHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPTDLRGGG NTAVTEDGLV AISAGCPKLH SILYFCQQMT NAALITVARN CPNFIRFRLC
401: ILEPHKPDHV TSQPLDEGFG AIVQACKNLK RLSVSGRLTD QVFLYIGMFA TQLEMLSIAF AGDTDKGMLY VLNGCKKMRK LEIRDSPFGD AALLADVNKY
501: ETMRSLWMSS CEVTLGGCKR LARKAPWLNV EIINENDNNR MEENGYEGRQ KVDKLYLYRT VVGTRVDAPP FVWIL
Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)
001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL
Arabidopsis Description
AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.