Factsheet for GSMUA_Achr6P16510_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
peroxisome 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr4P21020_001
GSMUA_Achr4P22520_001
GSMUA_Achr8P20610_001
GSMUA_Achr9P10700_001
GSMUA_Achr9P17620_001
GSMUA_Achr9P25550_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G12820.1	GSMUA_Achr10P...	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr4P21020_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr4P22520_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr8P20610_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P10700_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P25550_001	AT3G23050.1	15992545
AT1G12820.1	GSMUA_Achr9P17620_001	AT4G02570.1	15992545
AT3G26810.1	GSMUA_Achr10P...	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr4P21020_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr4P22520_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr8P20610_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr9P10700_001	AT3G23050.1	15992545
AT3G26810.1	GSMUA_Achr9P25550_001	AT3G23050.1	15992545

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	88.18	88.18
GSMUA_Achr10P...	Banana	cytosol	87.43	87.43
GSMUA_Achr6P08000_001	Banana	cytosol	86.12	86.12
GSMUA_Achr9P01140_001	Banana	cytosol	82.36	82.36
GSMUA_Achr6P20580_001	Banana	cytosol	70.54	75.2
HORVU6Hr1G021040.2	Barley	extracellular	18.2	69.29
VIT_14s0068g01330.t01	Wine grape	cytosol	72.98	68.01
Os04t0395600-01	Rice	cytosol	72.61	67.3
Zm00001d003911_P003	Maize	cytosol	71.11	65.91
HORVU2Hr1G070800.1	Barley	cytosol	70.92	65.85
KRG94665	Soybean	cytosol	70.54	65.73
TraesCS2D01G285000.1	Wheat	cytosol	70.73	65.68
KRH06858	Soybean	cytosol	70.36	65.56
TraesCS2B01G302900.1	Wheat	cytosol	70.54	65.51
TraesCS2A01G286200.1	Wheat	cytosol	70.54	65.51
KXG26136	Sorghum	cytosol	72.42	65.09
AT3G26810.1	Thale cress	cytosol	70.17	65.04
CDY28523	Canola	cytosol	69.98	64.87
Zm00001d025268_P001	Maize	cytosol	69.61	64.75
KRH70053	Soybean	cytosol	69.42	64.57
Bra032954.1-P	Field mustard	cytosol	69.61	64.52
CDY34211	Canola	cytosol	69.42	64.35
AT1G12820.1	Thale cress	cytosol	68.86	63.6
CDX71968	Canola	cytosol	66.98	61.76
Bra026953.1-P	Field mustard	cytosol	66.98	61.76
CDY16034	Canola	cytosol	66.98	61.66
KRH08397	Soybean	cytosol	65.85	61.26
CDY26594	Canola	cytosol	66.42	61.25
GSMUA_Achr5P26930_001	Banana	cytosol	53.28	61.21
CDY31282	Canola	cytosol	66.98	60.82
Bra016754.1-P	Field mustard	cytosol	66.79	60.34
CDY21068	Canola	cytosol	66.42	60.0
HORVU5Hr1G075620.2	Barley	cytosol	63.6	59.68
TraesCS5A01G281100.1	Wheat	cytosol	63.41	59.4
TraesCS5D01G288000.1	Wheat	cytosol	63.41	59.4
TraesCS5B01G280100.1	Wheat	cytosol	63.41	59.09
Os11t0515500-01	Rice	cytosol	62.66	58.8
GSMUA_Achr3P23850_001	Banana	cytosol	62.1	56.87
EES09791	Sorghum	cytosol	61.54	56.75
Zm00001d007357_P005	Maize	cytosol	58.54	54.45
GSMUA_Achr5P05520_001	Banana	cytosol	49.91	45.32
GSMUA_Achr3P06710_001	Banana	cytosol	48.59	45.2
GSMUA_Achr7P11780_001	Banana	cytosol	49.16	44.41
GSMUA_Achr5P28930_001	Banana	cytosol	30.77	29.29
GSMUA_Achr6P33630_001	Banana	cytosol, mitochondrion, nucleus	30.96	28.3
GSMUA_Achr9P03690_001	Banana	cytosol	31.71	28.03
GSMUA_Achr8P02350_001	Banana	cytosol	8.26	25.58

Protein Annotations

EnsemblPlants:GSMUA_Achr6P16510_001	EnsemblPlants:GSMUA_Achr6T16510_001	EnsemblPlantsGene:GSMUA_Achr6G16510_001	Gene3D:1.20.1280.50	Gene3D:3.80.10.10	InterPro:IPR032675
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_Cys-con_subtyp	PANTHER:PTHR43944	PANTHER:PTHR43944:SF5	SEG:seg	SMART:SM00367
SUPFAM:SSF52047	UniParc:UPI000295A8E4	UniProt:M0T7J9	MapMan:11.2.2.1.1	MapMan:19.2.2.8.1.4.6	:

Description

Transport inhibitor response 1-like protein Os04g0395600 [Source:GMGC_GENE;Acc:GSMUA_Achr6G16510_001]

Coordinates

chr6:+:11000536..11003098

Molecular Weight (calculated)

59335.8 Da

IEP (calculated)

6.247

GRAVY (calculated)

0.049

Length

533 amino acids

Sequence
(BLAST)

001: MTYFPEEVVE HIFDFVGSHR DRNTVSTGKP HFADFNLVPY DWGGFALPWI VAAARLCPGL EELRLKRMVV TDDGLELLAR SFPNFKSLVL ISCEGFSTDG
101: LAAIATYCRG LRELDLQENE VEDHGCQWLS FFPDSCTSLV SLNFGCLKGE VNGGALERLV ARCPNLRSLK LSPAVSVESL NKILARASHL VDLGTGSFAV
201: DHRTDVYHTL MNSFPKFKSL RNLSGFWDAS PCCLRAVYPV CTSLTVLNLS YAPAIQGDDL IKIICLCFKL QKLWVLDSIG DKGLAVVAST CKELQELRVF
301: PCDIYGAGTT SVTEEGLLAV SSGCPKLNSL LYFCYQMTNA ALITVAKNCP HFTRFRLCIL DPGKPDPVTN QPLDEGFGAI VRSCKNIRRL SLSGRLTDQV
401: FLYIGMYAER LEMLSIAFAG DSDKGMIYVL NGCKNLRKLE IRDCPFGDIA LLKNVAKYET MRSLWMSSCD VTLGGCKALA AKMPRLNVEI INENEETYEF
501: EENLSDRHKL EKIYVYRTVA GPRNDAPDFV WTL

Best Arabidopsis Sequence Match ( AT3G26810.1 )
(BLAST)

001: MNYFPDEVIE HVFDFVTSHK DRNAISLVCK SWYKIERYSR QKVFIGNCYA INPERLLRRF PCLKSLTLKG KPHFADFNLV PHEWGGFVLP WIEALARSRV
101: GLEELRLKRM VVTDESLELL SRSFVNFKSL VLVSCEGFTT DGLASIAANC RHLRDLDLQE NEIDDHRGQW LSCFPDTCTT LVTLNFACLE GETNLVALER
201: LVARSPNLKS LKLNRAVPLD ALARLMACAP QIVDLGVGSY ENDPDSESYL KLMAVIKKCT SLRSLSGFLE AAPHCLSAFH PICHNLTSLN LSYAAEIHGS
301: HLIKLIQHCK KLQRLWILDS IGDKGLEVVA STCKELQELR VFPSDLLGGG NTAVTEEGLV AISAGCPKLH SILYFCQQMT NAALVTVAKN CPNFIRFRLC
401: ILEPNKPDHV TSQPLDEGFG AIVKACKSLR RLSLSGLLTD QVFLYIGMYA NQLEMLSIAF AGDTDKGMLY VLNGCKKMKK LEIRDSPFGD TALLADVSKY
501: ETMRSLWMSS CEVTLSGCKR LAEKAPWLNV EIINENDNNR MEENGHEGRQ KVDKLYLYRT VVGTRMDAPP FVWIL

Arabidopsis Description

AFB2AFB2 [Source:UniProtKB/TrEMBL;Acc:A0A178VGF7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.